Hb_001114_290

Information

Type -
Description -
Location Contig1114: 232750-235452
Sequence    

Annotation

kegg
ID rcu:RCOM_0885160
description hypothetical protein
nr
ID XP_002522637.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S9G8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0885160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_173102_010 0.0183997718 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
3 Hb_005747_040 0.0189471418 - - PREDICTED: peroxidase N1-like, partial [Nicotiana sylvestris]
4 Hb_106528_010 0.0204590731 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
5 Hb_002551_010 0.0301340243 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_002997_010 0.0359072632 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
7 Hb_000264_250 0.0409897718 - - thioredoxin family protein [Arabidopsis thaliana]
8 Hb_169426_010 0.0424877016 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_005780_010 0.0427797554 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
10 Hb_180483_010 0.0433633304 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_008367_020 0.0480734712 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
12 Hb_000563_070 0.0515214166 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Sesamum indicum]
13 Hb_005747_020 0.0562903336 - - bacterial-induced peroxidase [Gossypium schwendimanii]
14 Hb_122025_010 0.0597379743 - - hypothetical protein POPTR_0003s052201g, partial [Populus trichocarpa]
15 Hb_001114_220 0.0618614455 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
16 Hb_001410_090 0.0645891577 - - transferase, putative [Ricinus communis]
17 Hb_000905_140 0.070705537 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
18 Hb_001114_300 0.0728642767 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
19 Hb_011495_020 0.0746412076 - - Pectinesterase-2 precursor, putative [Ricinus communis]
20 Hb_000329_410 0.0771115013 - - Beta-expansin 3 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001114_290 Hb_001114_290 Hb_173102_010 Hb_173102_010 Hb_001114_290--Hb_173102_010 Hb_005747_040 Hb_005747_040 Hb_001114_290--Hb_005747_040 Hb_106528_010 Hb_106528_010 Hb_001114_290--Hb_106528_010 Hb_002551_010 Hb_002551_010 Hb_001114_290--Hb_002551_010 Hb_002997_010 Hb_002997_010 Hb_001114_290--Hb_002997_010 Hb_000264_250 Hb_000264_250 Hb_001114_290--Hb_000264_250 Hb_173102_010--Hb_002997_010 Hb_169426_010 Hb_169426_010 Hb_173102_010--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_173102_010--Hb_005780_010 Hb_180483_010 Hb_180483_010 Hb_173102_010--Hb_180483_010 Hb_008367_020 Hb_008367_020 Hb_173102_010--Hb_008367_020 Hb_005747_040--Hb_106528_010 Hb_005747_040--Hb_002551_010 Hb_005747_040--Hb_000264_250 Hb_000563_070 Hb_000563_070 Hb_005747_040--Hb_000563_070 Hb_005747_040--Hb_173102_010 Hb_106528_010--Hb_002551_010 Hb_106528_010--Hb_000264_250 Hb_106528_010--Hb_000563_070 Hb_106528_010--Hb_173102_010 Hb_002551_010--Hb_000264_250 Hb_002551_010--Hb_000563_070 Hb_005747_020 Hb_005747_020 Hb_002551_010--Hb_005747_020 Hb_002997_010--Hb_169426_010 Hb_002997_010--Hb_005780_010 Hb_002997_010--Hb_180483_010 Hb_002997_010--Hb_008367_020 Hb_000264_250--Hb_000563_070 Hb_000264_250--Hb_005747_020 Hb_094462_010 Hb_094462_010 Hb_000264_250--Hb_094462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.188407 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.20384 0

CAGE analysis