Hb_001114_300

Information

Type -
Description -
Location Contig1114: 232795-233148
Sequence    

Annotation

kegg
ID rcu:RCOM_0885330
description lipid binding protein, putative
nr
ID KDP40971.1
description hypothetical protein JCGZ_24970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_300 0.0 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
2 Hb_000905_140 0.0350549246 - - PREDICTED: protein gamma response 1 isoform X2 [Jatropha curcas]
3 Hb_000329_410 0.044569389 - - Beta-expansin 3 precursor, putative [Ricinus communis]
4 Hb_000859_040 0.0575730621 - - Early nodulin 16 precursor, putative [Ricinus communis]
5 Hb_001141_170 0.0577508797 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
6 Hb_169426_010 0.059389151 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_005780_010 0.0593908505 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
8 Hb_180483_010 0.0593985477 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_002997_010 0.0597304131 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Malus domestica]
10 Hb_012019_030 0.0623238292 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
11 Hb_173102_010 0.0640045891 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
12 Hb_002281_070 0.065815577 - - hypothetical protein JCGZ_04352 [Jatropha curcas]
13 Hb_008367_020 0.0672413011 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 [Gossypium raimondii]
14 Hb_001410_090 0.0674000416 - - transferase, putative [Ricinus communis]
15 Hb_011495_020 0.0676452092 - - Pectinesterase-2 precursor, putative [Ricinus communis]
16 Hb_006478_190 0.0714043717 - - lipid binding protein, putative [Ricinus communis]
17 Hb_001114_290 0.0728642767 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000057_030 0.0741965515 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002200_010 0.0744869423 - - PREDICTED: sperm acrosomal protein FSA-ACR.1-like [Jatropha curcas]
20 Hb_000286_250 0.0755274304 desease resistance Gene Name: NB-ARC -

Gene co-expression network

sample Hb_001114_300 Hb_001114_300 Hb_000905_140 Hb_000905_140 Hb_001114_300--Hb_000905_140 Hb_000329_410 Hb_000329_410 Hb_001114_300--Hb_000329_410 Hb_000859_040 Hb_000859_040 Hb_001114_300--Hb_000859_040 Hb_001141_170 Hb_001141_170 Hb_001114_300--Hb_001141_170 Hb_169426_010 Hb_169426_010 Hb_001114_300--Hb_169426_010 Hb_005780_010 Hb_005780_010 Hb_001114_300--Hb_005780_010 Hb_000905_140--Hb_000329_410 Hb_180483_010 Hb_180483_010 Hb_000905_140--Hb_180483_010 Hb_000905_140--Hb_005780_010 Hb_000905_140--Hb_169426_010 Hb_011495_020 Hb_011495_020 Hb_000905_140--Hb_011495_020 Hb_000329_410--Hb_011495_020 Hb_000057_030 Hb_000057_030 Hb_000329_410--Hb_000057_030 Hb_002200_010 Hb_002200_010 Hb_000329_410--Hb_002200_010 Hb_000329_410--Hb_180483_010 Hb_007810_140 Hb_007810_140 Hb_000859_040--Hb_007810_140 Hb_000160_230 Hb_000160_230 Hb_000859_040--Hb_000160_230 Hb_001410_090 Hb_001410_090 Hb_000859_040--Hb_001410_090 Hb_002615_050 Hb_002615_050 Hb_000859_040--Hb_002615_050 Hb_006196_020 Hb_006196_020 Hb_000859_040--Hb_006196_020 Hb_012019_030 Hb_012019_030 Hb_001141_170--Hb_012019_030 Hb_010712_020 Hb_010712_020 Hb_001141_170--Hb_010712_020 Hb_004195_040 Hb_004195_040 Hb_001141_170--Hb_004195_040 Hb_001141_170--Hb_000859_040 Hb_011824_010 Hb_011824_010 Hb_001141_170--Hb_011824_010 Hb_169426_010--Hb_005780_010 Hb_169426_010--Hb_180483_010 Hb_002997_010 Hb_002997_010 Hb_169426_010--Hb_002997_010 Hb_173102_010 Hb_173102_010 Hb_169426_010--Hb_173102_010 Hb_008367_020 Hb_008367_020 Hb_169426_010--Hb_008367_020 Hb_169426_010--Hb_011495_020 Hb_005780_010--Hb_180483_010 Hb_005780_010--Hb_002997_010 Hb_005780_010--Hb_173102_010 Hb_005780_010--Hb_008367_020 Hb_005780_010--Hb_011495_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 19.6456 0.171405 0.64191 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 95.1321 0

CAGE analysis