Hb_001114_340

Information

Type -
Description -
Location Contig1114: 253511-257725
Sequence    

Annotation

kegg
ID bvg:104900936
description uncharacterized LOC104900936
nr
ID KDP30862.1
description hypothetical protein JCGZ_13805 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K417
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13805 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001114_340 0.0 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
2 Hb_064885_080 0.1090349437 - - -
3 Hb_000995_070 0.1529243258 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_010174_070 0.1710415976 - - -
5 Hb_100873_030 0.2006687213 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
6 Hb_042223_010 0.2063237452 - - Protein Z, putative [Ricinus communis]
7 Hb_000784_040 0.2254384952 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
8 Hb_080653_010 0.2299420612 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_001842_130 0.2367746211 - - conserved hypothetical protein [Ricinus communis]
10 Hb_088538_020 0.2369648226 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
11 Hb_000227_200 0.2427875138 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
12 Hb_179520_010 0.2438225953 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
13 Hb_000042_240 0.245737935 - - -
14 Hb_000230_320 0.2466149276 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
15 Hb_002522_020 0.247892847 - - hypothetical protein B456_011G148700, partial [Gossypium raimondii]
16 Hb_000008_180 0.2480668607 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000172_570 0.2518625498 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
18 Hb_002073_120 0.2572501963 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
19 Hb_108528_010 0.2619873875 - - unnamed protein product [Coffea canephora]
20 Hb_000141_240 0.262653593 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001114_340 Hb_001114_340 Hb_064885_080 Hb_064885_080 Hb_001114_340--Hb_064885_080 Hb_000995_070 Hb_000995_070 Hb_001114_340--Hb_000995_070 Hb_010174_070 Hb_010174_070 Hb_001114_340--Hb_010174_070 Hb_100873_030 Hb_100873_030 Hb_001114_340--Hb_100873_030 Hb_042223_010 Hb_042223_010 Hb_001114_340--Hb_042223_010 Hb_000784_040 Hb_000784_040 Hb_001114_340--Hb_000784_040 Hb_064885_080--Hb_010174_070 Hb_001842_130 Hb_001842_130 Hb_064885_080--Hb_001842_130 Hb_179520_010 Hb_179520_010 Hb_064885_080--Hb_179520_010 Hb_000230_320 Hb_000230_320 Hb_064885_080--Hb_000230_320 Hb_064885_080--Hb_000995_070 Hb_000995_070--Hb_100873_030 Hb_000995_070--Hb_000784_040 Hb_002073_120 Hb_002073_120 Hb_000995_070--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_000995_070--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_000995_070--Hb_010417_010 Hb_010174_070--Hb_179520_010 Hb_108528_010 Hb_108528_010 Hb_010174_070--Hb_108528_010 Hb_001902_120 Hb_001902_120 Hb_010174_070--Hb_001902_120 Hb_004064_020 Hb_004064_020 Hb_010174_070--Hb_004064_020 Hb_000141_240 Hb_000141_240 Hb_100873_030--Hb_000141_240 Hb_100873_030--Hb_042223_010 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_042223_010--Hb_156473_010 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_000227_200 Hb_000227_200 Hb_042223_010--Hb_000227_200 Hb_001587_210 Hb_001587_210 Hb_042223_010--Hb_001587_210 Hb_042223_010--Hb_000784_040 Hb_000784_040--Hb_000227_200 Hb_091433_040 Hb_091433_040 Hb_000784_040--Hb_091433_040 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_003599_070 Hb_003599_070 Hb_000784_040--Hb_003599_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.305697 0.213769 1.30149 0.181512 0

CAGE analysis