Hb_001115_100

Information

Type -
Description -
Location Contig1115: 119289-128002
Sequence    

Annotation

kegg
ID pda:103714121
description uncharacterized LOC103714121
nr
ID XP_008799495.1
description PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
swissprot
ID Q38857
description Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1
trembl
ID B9SJQ5
description Xyloglucan endotransglucosylase/hydrolase OS=Ricinus communis GN=RCOM_1629790 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable xyloglucan endotransglucosylase hydrolase protein 23

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03513: 119294-121517 , PASA_asmbl_03514: 126808-128019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_100 0.0 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
2 Hb_017549_010 0.0890624611 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
3 Hb_002186_030 0.1133482529 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g53430 isoform X1 [Populus euphratica]
4 Hb_003209_120 0.1259075808 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
5 Hb_004374_170 0.1273806131 - - PREDICTED: gibberellin 20 oxidase 1-B [Jatropha curcas]
6 Hb_001221_050 0.1345937158 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
7 Hb_001675_350 0.1353966804 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
8 Hb_029622_090 0.1375598047 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
9 Hb_000120_600 0.1376195623 - - PREDICTED: uncharacterized protein LOC105628582 [Jatropha curcas]
10 Hb_005946_200 0.1377254442 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
11 Hb_002804_070 0.1414238522 - - hypothetical protein JCGZ_05701 [Jatropha curcas]
12 Hb_000021_010 0.1418325951 - - conserved hypothetical protein [Ricinus communis]
13 Hb_104855_010 0.1431606916 - - -
14 Hb_010369_010 0.1453801236 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001257_120 0.1467846218 - - PREDICTED: probable CCR4-associated factor 1 homolog 9 [Jatropha curcas]
16 Hb_000139_050 0.1472418455 - - PREDICTED: uncharacterized protein LOC105631970 [Jatropha curcas]
17 Hb_002303_050 0.1473061341 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor PTL-like [Populus euphratica]
18 Hb_011671_360 0.1478170769 - - Hyoscyamine 6-dioxygenase, putative [Ricinus communis]
19 Hb_000358_170 0.1504494823 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor TINY-like [Jatropha curcas]
20 Hb_008352_020 0.1504953046 - - hypothetical protein [Cecembia lonarensis]

Gene co-expression network

sample Hb_001115_100 Hb_001115_100 Hb_017549_010 Hb_017549_010 Hb_001115_100--Hb_017549_010 Hb_002186_030 Hb_002186_030 Hb_001115_100--Hb_002186_030 Hb_003209_120 Hb_003209_120 Hb_001115_100--Hb_003209_120 Hb_004374_170 Hb_004374_170 Hb_001115_100--Hb_004374_170 Hb_001221_050 Hb_001221_050 Hb_001115_100--Hb_001221_050 Hb_001675_350 Hb_001675_350 Hb_001115_100--Hb_001675_350 Hb_000120_600 Hb_000120_600 Hb_017549_010--Hb_000120_600 Hb_002597_030 Hb_002597_030 Hb_017549_010--Hb_002597_030 Hb_017549_010--Hb_004374_170 Hb_002804_070 Hb_002804_070 Hb_017549_010--Hb_002804_070 Hb_029576_070 Hb_029576_070 Hb_017549_010--Hb_029576_070 Hb_006951_010 Hb_006951_010 Hb_002186_030--Hb_006951_010 Hb_000201_070 Hb_000201_070 Hb_002186_030--Hb_000201_070 Hb_002186_030--Hb_004374_170 Hb_005946_200 Hb_005946_200 Hb_002186_030--Hb_005946_200 Hb_002186_030--Hb_002804_070 Hb_000358_170 Hb_000358_170 Hb_003209_120--Hb_000358_170 Hb_003209_040 Hb_003209_040 Hb_003209_120--Hb_003209_040 Hb_027905_010 Hb_027905_010 Hb_003209_120--Hb_027905_010 Hb_000777_020 Hb_000777_020 Hb_003209_120--Hb_000777_020 Hb_001257_120 Hb_001257_120 Hb_003209_120--Hb_001257_120 Hb_004374_170--Hb_002804_070 Hb_004374_170--Hb_006951_010 Hb_001953_010 Hb_001953_010 Hb_004374_170--Hb_001953_010 Hb_004374_170--Hb_000120_600 Hb_004374_170--Hb_005946_200 Hb_001221_050--Hb_005946_200 Hb_003427_020 Hb_003427_020 Hb_001221_050--Hb_003427_020 Hb_021576_160 Hb_021576_160 Hb_001221_050--Hb_021576_160 Hb_006153_020 Hb_006153_020 Hb_001221_050--Hb_006153_020 Hb_001221_050--Hb_002804_070 Hb_001333_030 Hb_001333_030 Hb_001221_050--Hb_001333_030 Hb_002303_050 Hb_002303_050 Hb_001675_350--Hb_002303_050 Hb_004474_070 Hb_004474_070 Hb_001675_350--Hb_004474_070 Hb_001675_350--Hb_001953_010 Hb_000139_390 Hb_000139_390 Hb_001675_350--Hb_000139_390 Hb_001675_350--Hb_000120_600 Hb_001675_350--Hb_002804_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0243419 12.6388 7.51225 18.8474 0.349055 0.0439829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0553998 0.108967 0 0.208496 0.824059

CAGE analysis