Hb_001116_020

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig1116: 55694-59184
Sequence    

Annotation

kegg
ID egr:104452517
description disease resistance protein RPS2-like
nr
ID XP_010065276.1
description PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID A0A059B985
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G00249 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001116_020 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]
2 Hb_002400_100 0.181244624 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
3 Hb_034083_010 0.1905857221 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001102_110 0.1909320596 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1-like [Jatropha curcas]
5 Hb_040996_010 0.1978979927 - - PREDICTED: LOW QUALITY PROTEIN: helicase SEN1-like [Jatropha curcas]
6 Hb_006026_040 0.1996752707 - - PREDICTED: 60S ribosomal protein L13a-4-like [Jatropha curcas]
7 Hb_002233_090 0.2004411785 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
8 Hb_161072_040 0.2026419981 - - PREDICTED: replication factor C subunit 2 isoform X1 [Jatropha curcas]
9 Hb_012055_020 0.2028017536 - - PREDICTED: metal transporter Nramp3 [Jatropha curcas]
10 Hb_000599_120 0.2090058672 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT34 [Jatropha curcas]
11 Hb_003656_030 0.2100353875 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
12 Hb_032531_030 0.2108081621 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
13 Hb_002038_060 0.2119777581 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
14 Hb_022288_020 0.2134950924 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
15 Hb_036034_010 0.2141621279 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003813_100 0.2145700221 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
17 Hb_000208_290 0.2194831039 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2 isoform X2 [Jatropha curcas]
18 Hb_010261_020 0.2204969217 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
19 Hb_003777_220 0.2211864907 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
20 Hb_000984_180 0.2217712534 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001116_020 Hb_001116_020 Hb_002400_100 Hb_002400_100 Hb_001116_020--Hb_002400_100 Hb_034083_010 Hb_034083_010 Hb_001116_020--Hb_034083_010 Hb_001102_110 Hb_001102_110 Hb_001116_020--Hb_001102_110 Hb_040996_010 Hb_040996_010 Hb_001116_020--Hb_040996_010 Hb_006026_040 Hb_006026_040 Hb_001116_020--Hb_006026_040 Hb_002233_090 Hb_002233_090 Hb_001116_020--Hb_002233_090 Hb_000384_040 Hb_000384_040 Hb_002400_100--Hb_000384_040 Hb_002400_100--Hb_002233_090 Hb_051407_010 Hb_051407_010 Hb_002400_100--Hb_051407_010 Hb_000384_030 Hb_000384_030 Hb_002400_100--Hb_000384_030 Hb_010436_020 Hb_010436_020 Hb_002400_100--Hb_010436_020 Hb_005227_070 Hb_005227_070 Hb_034083_010--Hb_005227_070 Hb_012055_020 Hb_012055_020 Hb_034083_010--Hb_012055_020 Hb_032531_030 Hb_032531_030 Hb_034083_010--Hb_032531_030 Hb_000984_180 Hb_000984_180 Hb_034083_010--Hb_000984_180 Hb_001040_170 Hb_001040_170 Hb_034083_010--Hb_001040_170 Hb_000230_110 Hb_000230_110 Hb_034083_010--Hb_000230_110 Hb_176022_020 Hb_176022_020 Hb_001102_110--Hb_176022_020 Hb_004156_060 Hb_004156_060 Hb_001102_110--Hb_004156_060 Hb_001102_110--Hb_012055_020 Hb_004884_060 Hb_004884_060 Hb_001102_110--Hb_004884_060 Hb_003656_030 Hb_003656_030 Hb_001102_110--Hb_003656_030 Hb_001102_110--Hb_040996_010 Hb_040996_010--Hb_176022_020 Hb_040996_010--Hb_012055_020 Hb_000057_060 Hb_000057_060 Hb_040996_010--Hb_000057_060 Hb_019613_020 Hb_019613_020 Hb_040996_010--Hb_019613_020 Hb_000599_120 Hb_000599_120 Hb_040996_010--Hb_000599_120 Hb_000005_050 Hb_000005_050 Hb_040996_010--Hb_000005_050 Hb_000424_240 Hb_000424_240 Hb_006026_040--Hb_000424_240 Hb_000077_130 Hb_000077_130 Hb_006026_040--Hb_000077_130 Hb_036034_010 Hb_036034_010 Hb_006026_040--Hb_036034_010 Hb_000248_050 Hb_000248_050 Hb_006026_040--Hb_000248_050 Hb_022288_010 Hb_022288_010 Hb_006026_040--Hb_022288_010 Hb_000307_200 Hb_000307_200 Hb_006026_040--Hb_000307_200 Hb_109168_010 Hb_109168_010 Hb_002233_090--Hb_109168_010 Hb_001959_050 Hb_001959_050 Hb_002233_090--Hb_001959_050 Hb_000395_140 Hb_000395_140 Hb_002233_090--Hb_000395_140 Hb_002233_090--Hb_001040_170 Hb_006091_030 Hb_006091_030 Hb_002233_090--Hb_006091_030 Hb_000926_120 Hb_000926_120 Hb_002233_090--Hb_000926_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.8293 0.037418 0.00931753 0.00857328 47.3094 56.7522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.7519 9.94437 23.7621 16.2703 7.45265

CAGE analysis