Hb_001117_050

Information

Type -
Description -
Location Contig1117: 41185-43095
Sequence    

Annotation

kegg
ID tcc:TCM_030368
description E3 ubiquitin-protein ligase UPL5
nr
ID XP_007026270.1
description E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID A0A061GI97
description E3 ubiquitin-protein ligase UPL5 OS=Theobroma cacao GN=TCM_030368 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03530: 42823-43048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_050 0.0 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
2 Hb_005542_120 0.0603793582 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
3 Hb_001794_040 0.06691036 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
4 Hb_008054_030 0.0722216859 - - PREDICTED: VQ motif-containing protein 1-like [Jatropha curcas]
5 Hb_000392_110 0.0727273546 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_008221_200 0.0760304194 - - PREDICTED: protein trichome birefringence-like 41 [Jatropha curcas]
7 Hb_010164_030 0.0812374218 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
8 Hb_015048_020 0.0814179864 - - PREDICTED: myb-like protein D [Jatropha curcas]
9 Hb_000878_050 0.0850616449 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
10 Hb_000012_350 0.0851270372 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
11 Hb_003339_010 0.0865082116 - - hypothetical protein JCGZ_04276 [Jatropha curcas]
12 Hb_003054_070 0.0878233763 transcription factor TF Family: Orphans DNA binding protein, putative [Ricinus communis]
13 Hb_011853_020 0.0906555176 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
14 Hb_000032_420 0.0914951688 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
15 Hb_000718_060 0.0957567526 transcription factor TF Family: MYB DNA binding protein, putative [Ricinus communis]
16 Hb_001136_160 0.0972449536 - - catalytic, putative [Ricinus communis]
17 Hb_010449_010 0.0974225575 - - l-ascorbate oxidase, putative [Ricinus communis]
18 Hb_020738_010 0.0981969039 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
19 Hb_000077_280 0.0995484414 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_017383_010 0.100158235 - - PREDICTED: uncharacterized protein LOC105628176 [Jatropha curcas]

Gene co-expression network

sample Hb_001117_050 Hb_001117_050 Hb_005542_120 Hb_005542_120 Hb_001117_050--Hb_005542_120 Hb_001794_040 Hb_001794_040 Hb_001117_050--Hb_001794_040 Hb_008054_030 Hb_008054_030 Hb_001117_050--Hb_008054_030 Hb_000392_110 Hb_000392_110 Hb_001117_050--Hb_000392_110 Hb_008221_200 Hb_008221_200 Hb_001117_050--Hb_008221_200 Hb_010164_030 Hb_010164_030 Hb_001117_050--Hb_010164_030 Hb_000878_050 Hb_000878_050 Hb_005542_120--Hb_000878_050 Hb_011918_070 Hb_011918_070 Hb_005542_120--Hb_011918_070 Hb_005542_120--Hb_000392_110 Hb_001396_030 Hb_001396_030 Hb_005542_120--Hb_001396_030 Hb_000003_280 Hb_000003_280 Hb_005542_120--Hb_000003_280 Hb_000012_350 Hb_000012_350 Hb_001794_040--Hb_000012_350 Hb_020738_010 Hb_020738_010 Hb_001794_040--Hb_020738_010 Hb_017383_010 Hb_017383_010 Hb_001794_040--Hb_017383_010 Hb_000032_420 Hb_000032_420 Hb_001794_040--Hb_000032_420 Hb_010449_010 Hb_010449_010 Hb_001794_040--Hb_010449_010 Hb_003339_010 Hb_003339_010 Hb_008054_030--Hb_003339_010 Hb_000028_190 Hb_000028_190 Hb_008054_030--Hb_000028_190 Hb_007163_100 Hb_007163_100 Hb_008054_030--Hb_007163_100 Hb_005762_010 Hb_005762_010 Hb_008054_030--Hb_005762_010 Hb_002150_090 Hb_002150_090 Hb_008054_030--Hb_002150_090 Hb_008054_030--Hb_008221_200 Hb_004202_020 Hb_004202_020 Hb_000392_110--Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_000392_110--Hb_000483_450 Hb_000392_110--Hb_000878_050 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_001047_090 Hb_001047_090 Hb_000392_110--Hb_001047_090 Hb_000718_060 Hb_000718_060 Hb_008221_200--Hb_000718_060 Hb_002942_200 Hb_002942_200 Hb_008221_200--Hb_002942_200 Hb_009393_090 Hb_009393_090 Hb_008221_200--Hb_009393_090 Hb_008221_200--Hb_003339_010 Hb_147006_010 Hb_147006_010 Hb_010164_030--Hb_147006_010 Hb_003054_070 Hb_003054_070 Hb_010164_030--Hb_003054_070 Hb_010164_030--Hb_000012_350 Hb_001427_100 Hb_001427_100 Hb_010164_030--Hb_001427_100 Hb_036520_030 Hb_036520_030 Hb_010164_030--Hb_036520_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.367734 1.43957 2.34768 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.124054 1.17375

CAGE analysis