Hb_001117_070

Information

Type -
Description -
Location Contig1117: 47278-50261
Sequence    

Annotation

kegg
ID rcu:RCOM_0903830
description 30S ribosomal protein S19, putative
nr
ID XP_002518455.1
description 30S ribosomal protein S19, putative [Ricinus communis]
swissprot
ID P27527
description Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2
trembl
ID B9RXI6
description 30S ribosomal protein S19, putative OS=Ricinus communis GN=RCOM_0903830 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein s19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_070 0.0 - - 30S ribosomal protein S19, putative [Ricinus communis]
2 Hb_000243_140 0.1451739561 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
3 Hb_000796_250 0.1468501757 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
4 Hb_009510_040 0.1693798947 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
5 Hb_001902_190 0.1814449002 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
6 Hb_000640_300 0.1873116903 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
7 Hb_000432_040 0.1920038543 - - PREDICTED: remorin-like [Jatropha curcas]
8 Hb_001529_050 0.192243288 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
9 Hb_138585_110 0.19285834 - - -
10 Hb_001004_110 0.1929658588 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001183_010 0.1978093057 - - -
12 Hb_004230_040 0.198563069 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005568_080 0.198607575 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004705_140 0.1987573503 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
15 Hb_010407_170 0.1987733354 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
16 Hb_000140_410 0.1990108805 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
17 Hb_000227_060 0.2023004864 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
18 Hb_000451_070 0.203515477 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
19 Hb_000260_290 0.2044732658 - - PREDICTED: protein MTL1-like isoform X1 [Jatropha curcas]
20 Hb_000016_100 0.2053940669 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]

Gene co-expression network

sample Hb_001117_070 Hb_001117_070 Hb_000243_140 Hb_000243_140 Hb_001117_070--Hb_000243_140 Hb_000796_250 Hb_000796_250 Hb_001117_070--Hb_000796_250 Hb_009510_040 Hb_009510_040 Hb_001117_070--Hb_009510_040 Hb_001902_190 Hb_001902_190 Hb_001117_070--Hb_001902_190 Hb_000640_300 Hb_000640_300 Hb_001117_070--Hb_000640_300 Hb_000432_040 Hb_000432_040 Hb_001117_070--Hb_000432_040 Hb_000243_140--Hb_009510_040 Hb_000243_140--Hb_000640_300 Hb_001619_080 Hb_001619_080 Hb_000243_140--Hb_001619_080 Hb_005333_150 Hb_005333_150 Hb_000243_140--Hb_005333_150 Hb_003052_220 Hb_003052_220 Hb_000243_140--Hb_003052_220 Hb_138585_110 Hb_138585_110 Hb_000796_250--Hb_138585_110 Hb_000318_200 Hb_000318_200 Hb_000796_250--Hb_000318_200 Hb_000260_290 Hb_000260_290 Hb_000796_250--Hb_000260_290 Hb_001049_020 Hb_001049_020 Hb_000796_250--Hb_001049_020 Hb_004230_040 Hb_004230_040 Hb_000796_250--Hb_004230_040 Hb_165669_010 Hb_165669_010 Hb_009510_040--Hb_165669_010 Hb_000503_050 Hb_000503_050 Hb_009510_040--Hb_000503_050 Hb_000003_050 Hb_000003_050 Hb_009510_040--Hb_000003_050 Hb_002577_010 Hb_002577_010 Hb_009510_040--Hb_002577_010 Hb_000419_060 Hb_000419_060 Hb_009510_040--Hb_000419_060 Hb_001902_190--Hb_004230_040 Hb_000227_060 Hb_000227_060 Hb_001902_190--Hb_000227_060 Hb_000451_070 Hb_000451_070 Hb_001902_190--Hb_000451_070 Hb_115241_010 Hb_115241_010 Hb_001902_190--Hb_115241_010 Hb_002961_060 Hb_002961_060 Hb_001902_190--Hb_002961_060 Hb_002042_130 Hb_002042_130 Hb_001902_190--Hb_002042_130 Hb_000589_400 Hb_000589_400 Hb_000640_300--Hb_000589_400 Hb_007451_020 Hb_007451_020 Hb_000640_300--Hb_007451_020 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_000640_300--Hb_004230_040 Hb_028487_020 Hb_028487_020 Hb_000432_040--Hb_028487_020 Hb_001564_080 Hb_001564_080 Hb_000432_040--Hb_001564_080 Hb_002097_200 Hb_002097_200 Hb_000432_040--Hb_002097_200 Hb_006582_020 Hb_006582_020 Hb_000432_040--Hb_006582_020 Hb_000432_040--Hb_115241_010 Hb_000432_040--Hb_000451_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.2545 3.30361 0.220742 0.473851 0.483856 0.513847
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70504 2.47638 1.30638 3.55444 0.323208

CAGE analysis