Hb_001117_080

Information

Type -
Description -
Location Contig1117: 54250-60570
Sequence    

Annotation

kegg
ID rcu:RCOM_1046440
description mitogen activated protein kinase kinase, mapkk2, putative (EC:2.7.12.2)
nr
ID XP_012076983.1
description PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q9S7U9
description Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2
trembl
ID A0A067KCC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07442 PE=4 SV=1
Gene Ontology
ID GO:0004672
description mitogen-activated protein kinase kinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03531: 53275-60664
cDNA
(Sanger)
(ID:Location)		 044_D11.ab1: 54661-60664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_080 0.0 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
2 Hb_000098_180 0.0919278608 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
3 Hb_086639_050 0.1046302558 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
4 Hb_002432_050 0.11134419 - - PREDICTED: uncharacterized protein LOC105648523 [Jatropha curcas]
5 Hb_000649_330 0.1123085889 - - hypothetical protein POPTR_0010s11880g [Populus trichocarpa]
6 Hb_000567_090 0.1157077209 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
7 Hb_002249_170 0.116370986 - - copine, putative [Ricinus communis]
8 Hb_005903_020 0.1219054128 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
9 Hb_054865_050 0.1231331785 - - calcium-dependent protein kinase, putative [Ricinus communis]
10 Hb_000086_180 0.1250190003 - - hypothetical protein JCGZ_17674 [Jatropha curcas]
11 Hb_027043_010 0.1251808287 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD4 [Jatropha curcas]
12 Hb_000032_410 0.12649056 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
13 Hb_011671_340 0.1287000203 - - small GTPase [Hevea brasiliensis]
14 Hb_000015_150 0.1288817596 - - Ubiquitin-conjugating enzyme E2 7 family protein [Populus trichocarpa]
15 Hb_000000_480 0.1291616553 - - PREDICTED: deSI-like protein At4g17486 isoform X1 [Jatropha curcas]
16 Hb_004545_080 0.1293530398 - - protein with unknown function [Ricinus communis]
17 Hb_007575_030 0.1315298496 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
18 Hb_005527_060 0.1316477723 - - malic enzyme, putative [Ricinus communis]
19 Hb_002411_160 0.1325937627 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
20 Hb_000589_170 0.1330297293 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_001117_080 Hb_001117_080 Hb_000098_180 Hb_000098_180 Hb_001117_080--Hb_000098_180 Hb_086639_050 Hb_086639_050 Hb_001117_080--Hb_086639_050 Hb_002432_050 Hb_002432_050 Hb_001117_080--Hb_002432_050 Hb_000649_330 Hb_000649_330 Hb_001117_080--Hb_000649_330 Hb_000567_090 Hb_000567_090 Hb_001117_080--Hb_000567_090 Hb_002249_170 Hb_002249_170 Hb_001117_080--Hb_002249_170 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_002259_220 Hb_002259_220 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010 Hb_002411_160 Hb_002411_160 Hb_086639_050--Hb_002411_160 Hb_080147_020 Hb_080147_020 Hb_086639_050--Hb_080147_020 Hb_086639_050--Hb_002249_170 Hb_086639_050--Hb_000567_090 Hb_000111_390 Hb_000111_390 Hb_086639_050--Hb_000111_390 Hb_005527_060 Hb_005527_060 Hb_002432_050--Hb_005527_060 Hb_000594_060 Hb_000594_060 Hb_002432_050--Hb_000594_060 Hb_001663_130 Hb_001663_130 Hb_002432_050--Hb_001663_130 Hb_013968_010 Hb_013968_010 Hb_002432_050--Hb_013968_010 Hb_002432_050--Hb_011188_010 Hb_001001_090 Hb_001001_090 Hb_000649_330--Hb_001001_090 Hb_000015_150 Hb_000015_150 Hb_000649_330--Hb_000015_150 Hb_009078_020 Hb_009078_020 Hb_000649_330--Hb_009078_020 Hb_002849_050 Hb_002849_050 Hb_000649_330--Hb_002849_050 Hb_000649_330--Hb_011188_010 Hb_005214_070 Hb_005214_070 Hb_000649_330--Hb_005214_070 Hb_000567_090--Hb_080147_020 Hb_052135_020 Hb_052135_020 Hb_000567_090--Hb_052135_020 Hb_001221_580 Hb_001221_580 Hb_000567_090--Hb_001221_580 Hb_000567_090--Hb_000098_180 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_054865_050 Hb_054865_050 Hb_002249_170--Hb_054865_050 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22271 17.5549 44.0307 23.588 4.37182 3.18627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4871 3.45426 4.58544 18.0406 15.5409

CAGE analysis