Hb_001117_090

Information

Type -
Description -
Location Contig1117: 61586-64199
Sequence    

Annotation

kegg
ID rcu:RCOM_0497310
description short-chain dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_012066739.1
description PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
swissprot
ID Q9SY73
description NADPH-dependent pterin aldehyde reductase OS=Arabidopsis thaliana GN=At1g10310 PE=1 SV=1
trembl
ID A0A067LDB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00292 PE=3 SV=1
Gene Ontology
ID GO:0009507
description nadph-dependent pterin aldehyde reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03533: 61587-64146
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_090 0.0 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
2 Hb_000926_300 0.0782876317 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
3 Hb_003599_040 0.0793639133 - - unnamed protein product [Vitis vinifera]
4 Hb_000877_020 0.0797555645 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
5 Hb_000340_140 0.08243063 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
6 Hb_009421_040 0.082610365 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
7 Hb_001246_060 0.0833682258 - - ATP binding protein, putative [Ricinus communis]
8 Hb_004800_120 0.0837573124 - - PREDICTED: maf-like protein DDB_G0281937 isoform X1 [Jatropha curcas]
9 Hb_002685_190 0.0838095524 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
10 Hb_143629_230 0.084772396 - - ring finger, putative [Ricinus communis]
11 Hb_004871_040 0.0863872094 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
12 Hb_024714_010 0.0887482509 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
13 Hb_000465_060 0.0906630874 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
14 Hb_000317_340 0.0915518831 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000086_550 0.0917132676 - - Os02g0814700 [Oryza sativa Japonica Group]
16 Hb_002477_070 0.09217915 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_001421_060 0.0936781327 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
18 Hb_032202_090 0.0939419871 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
19 Hb_001009_300 0.0954026007 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
20 Hb_000327_190 0.0969588764 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_001117_090 Hb_001117_090 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_000340_140 Hb_000340_140 Hb_001117_090--Hb_000340_140 Hb_009421_040 Hb_009421_040 Hb_001117_090--Hb_009421_040 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060 Hb_000007_100 Hb_000007_100 Hb_000926_300--Hb_000007_100 Hb_128048_010 Hb_128048_010 Hb_000926_300--Hb_128048_010 Hb_000926_300--Hb_003599_040 Hb_012573_070 Hb_012573_070 Hb_000926_300--Hb_012573_070 Hb_002284_240 Hb_002284_240 Hb_000926_300--Hb_002284_240 Hb_000307_090 Hb_000307_090 Hb_000926_300--Hb_000307_090 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_003599_040--Hb_000007_100 Hb_094608_010 Hb_094608_010 Hb_000877_020--Hb_094608_010 Hb_000483_410 Hb_000483_410 Hb_000877_020--Hb_000483_410 Hb_024714_010 Hb_024714_010 Hb_000877_020--Hb_024714_010 Hb_012725_050 Hb_012725_050 Hb_000877_020--Hb_012725_050 Hb_002214_040 Hb_002214_040 Hb_000877_020--Hb_002214_040 Hb_001383_060 Hb_001383_060 Hb_000340_140--Hb_001383_060 Hb_002963_010 Hb_002963_010 Hb_000340_140--Hb_002963_010 Hb_000086_550 Hb_000086_550 Hb_000340_140--Hb_000086_550 Hb_000170_010 Hb_000170_010 Hb_000340_140--Hb_000170_010 Hb_000283_110 Hb_000283_110 Hb_000340_140--Hb_000283_110 Hb_000221_150 Hb_000221_150 Hb_000340_140--Hb_000221_150 Hb_005357_130 Hb_005357_130 Hb_009421_040--Hb_005357_130 Hb_002687_170 Hb_002687_170 Hb_009421_040--Hb_002687_170 Hb_009421_040--Hb_000086_550 Hb_003623_050 Hb_003623_050 Hb_009421_040--Hb_003623_050 Hb_005211_190 Hb_005211_190 Hb_009421_040--Hb_005211_190 Hb_001951_140 Hb_001951_140 Hb_001246_060--Hb_001951_140 Hb_002686_020 Hb_002686_020 Hb_001246_060--Hb_002686_020 Hb_002205_070 Hb_002205_070 Hb_001246_060--Hb_002205_070 Hb_001540_010 Hb_001540_010 Hb_001246_060--Hb_001540_010 Hb_026549_040 Hb_026549_040 Hb_001246_060--Hb_026549_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9608 7.91515 13.6573 12.6498 27.443 41.9855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4484 68.68 27.024 18.67 20.279

CAGE analysis