Hb_001117_160

Information

Type -
Description -
Location Contig1117: 120513-126737
Sequence    

Annotation

kegg
ID rcu:RCOM_0525150
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012066728.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
swissprot
ID Q9SY69
description Pentatricopeptide repeat-containing protein At1g10270 OS=Arabidopsis thaliana GN=GRP23 PE=1 SV=1
trembl
ID A0A067L223
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00284 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001117_160 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g10270 [Jatropha curcas]
2 Hb_000069_320 0.1227808356 - - PREDICTED: uncharacterized protein LOC105642846 [Jatropha curcas]
3 Hb_003604_030 0.1275308908 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
4 Hb_002097_050 0.1276818862 - - PREDICTED: protein fluG isoform X1 [Jatropha curcas]
5 Hb_001431_120 0.1284227665 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
6 Hb_001401_060 0.128629176 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
7 Hb_001440_040 0.1304042193 - - hypothetical protein POPTR_0008s03520g [Populus trichocarpa]
8 Hb_011202_020 0.1346540118 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
9 Hb_011671_230 0.1360039259 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002631_140 0.1382593022 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [Jatropha curcas]
11 Hb_002044_170 0.1398700107 - - hypothetical protein POPTR_0014s17160g [Populus trichocarpa]
12 Hb_004064_050 0.140711907 - - Structural maintenance of chromosome, putative [Ricinus communis]
13 Hb_005214_150 0.1411954992 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
14 Hb_000347_560 0.142893217 - - -
15 Hb_012490_060 0.1431837567 - - PREDICTED: UBP1-associated proteins 1C isoform X1 [Jatropha curcas]
16 Hb_143489_020 0.1434892938 - - -
17 Hb_001235_230 0.1441009497 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
18 Hb_118840_030 0.1442009349 - - PREDICTED: vacuolar protein sorting-associated protein 18 homolog [Jatropha curcas]
19 Hb_007186_020 0.1443265152 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
20 Hb_000176_130 0.1455593787 - - PREDICTED: probable splicing factor 3A subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001117_160 Hb_001117_160 Hb_000069_320 Hb_000069_320 Hb_001117_160--Hb_000069_320 Hb_003604_030 Hb_003604_030 Hb_001117_160--Hb_003604_030 Hb_002097_050 Hb_002097_050 Hb_001117_160--Hb_002097_050 Hb_001431_120 Hb_001431_120 Hb_001117_160--Hb_001431_120 Hb_001401_060 Hb_001401_060 Hb_001117_160--Hb_001401_060 Hb_001440_040 Hb_001440_040 Hb_001117_160--Hb_001440_040 Hb_005488_150 Hb_005488_150 Hb_000069_320--Hb_005488_150 Hb_000041_090 Hb_000041_090 Hb_000069_320--Hb_000041_090 Hb_148909_030 Hb_148909_030 Hb_000069_320--Hb_148909_030 Hb_000406_020 Hb_000406_020 Hb_000069_320--Hb_000406_020 Hb_006295_020 Hb_006295_020 Hb_000069_320--Hb_006295_020 Hb_000069_320--Hb_001440_040 Hb_003604_040 Hb_003604_040 Hb_003604_030--Hb_003604_040 Hb_000162_020 Hb_000162_020 Hb_003604_030--Hb_000162_020 Hb_003604_030--Hb_001401_060 Hb_011947_050 Hb_011947_050 Hb_003604_030--Hb_011947_050 Hb_174865_020 Hb_174865_020 Hb_003604_030--Hb_174865_020 Hb_002170_050 Hb_002170_050 Hb_002097_050--Hb_002170_050 Hb_000025_710 Hb_000025_710 Hb_002097_050--Hb_000025_710 Hb_027472_220 Hb_027472_220 Hb_002097_050--Hb_027472_220 Hb_188063_010 Hb_188063_010 Hb_002097_050--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_002097_050--Hb_005402_040 Hb_011202_020 Hb_011202_020 Hb_002097_050--Hb_011202_020 Hb_012146_050 Hb_012146_050 Hb_001431_120--Hb_012146_050 Hb_001341_180 Hb_001341_180 Hb_001431_120--Hb_001341_180 Hb_001431_120--Hb_005402_040 Hb_003645_060 Hb_003645_060 Hb_001431_120--Hb_003645_060 Hb_004064_050 Hb_004064_050 Hb_001431_120--Hb_004064_050 Hb_001381_050 Hb_001381_050 Hb_001431_120--Hb_001381_050 Hb_000176_130 Hb_000176_130 Hb_001401_060--Hb_000176_130 Hb_000086_690 Hb_000086_690 Hb_001401_060--Hb_000086_690 Hb_001235_230 Hb_001235_230 Hb_001401_060--Hb_001235_230 Hb_002044_170 Hb_002044_170 Hb_001401_060--Hb_002044_170 Hb_001401_060--Hb_001440_040 Hb_001401_060--Hb_000406_020 Hb_001440_040--Hb_001235_230 Hb_032920_130 Hb_032920_130 Hb_001440_040--Hb_032920_130 Hb_001440_040--Hb_005488_150 Hb_001440_040--Hb_002044_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.383559 0.966652 0.546774 0.472343 1.08642 1.33592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0667054 0.275575 0.350609 0.916795 1.03328

CAGE analysis