Hb_001123_030

Information

Type -
Description -
Location Contig1123: 11028-15868
Sequence    

Annotation

kegg
ID rcu:RCOM_1437480
description abc transporter, putative (EC:3.6.3.25)
nr
ID AIU41661.1
description ABC transporter family protein [Hevea brasiliensis]
swissprot
ID Q9AT00
description Protein TRIGALACTOSYLDIACYLGLYCEROL 3, chloroplastic OS=Arabidopsis thaliana GN=TGD3 PE=1 SV=1
trembl
ID A0A097P9U3
description ABC transporter family protein OS=Hevea brasiliensis GN=ABCI13 PE=2 SV=1
Gene Ontology
ID GO:0005524
description protein trigalactosyldiacylglycerol chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03712: 11028-15744 , PASA_asmbl_03713: 13473-15744 , PASA_asmbl_03714: 12576-13452 , PASA_asmbl_03716: 14075-14266
cDNA
(Sanger)
(ID:Location)		 005_D12.ab1: 14688-15725 , 015_G18.ab1: 15079-15725 , 039_F11.ab1: 15016-15725

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_030 0.0 - - ABC transporter family protein [Hevea brasiliensis]
2 Hb_000302_310 0.0858244398 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
3 Hb_000261_230 0.0911945356 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
4 Hb_001214_060 0.0920510045 - - PREDICTED: phosphoinositide phosphatase SAC8 [Jatropha curcas]
5 Hb_011909_120 0.0937635939 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
6 Hb_000126_010 0.0938721415 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
7 Hb_022181_030 0.0986122789 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
8 Hb_000005_220 0.0987405306 - - DNA ligase 1, partial [Glycine soja]
9 Hb_002073_190 0.0993530743 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
10 Hb_000000_150 0.0997425394 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_005730_120 0.1009821992 - - PREDICTED: protein WHI4 [Jatropha curcas]
12 Hb_002739_020 0.1052763821 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
13 Hb_000035_110 0.1071830737 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
14 Hb_003688_090 0.1075502015 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
15 Hb_002820_050 0.1080382635 - - PREDICTED: putative glutathione-specific gamma-glutamylcyclotransferase 2 [Jatropha curcas]
16 Hb_032990_010 0.1098363238 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
17 Hb_033834_030 0.1103327853 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
18 Hb_004453_130 0.1108937839 - - PREDICTED: tRNA (cytosine-5-)-methyltransferase isoform X1 [Jatropha curcas]
19 Hb_003038_120 0.1109576226 - - rer1 protein, putative [Ricinus communis]
20 Hb_004319_080 0.1113702628 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_030 Hb_001123_030 Hb_000302_310 Hb_000302_310 Hb_001123_030--Hb_000302_310 Hb_000261_230 Hb_000261_230 Hb_001123_030--Hb_000261_230 Hb_001214_060 Hb_001214_060 Hb_001123_030--Hb_001214_060 Hb_011909_120 Hb_011909_120 Hb_001123_030--Hb_011909_120 Hb_000126_010 Hb_000126_010 Hb_001123_030--Hb_000126_010 Hb_022181_030 Hb_022181_030 Hb_001123_030--Hb_022181_030 Hb_000302_310--Hb_001214_060 Hb_002681_090 Hb_002681_090 Hb_000302_310--Hb_002681_090 Hb_001860_030 Hb_001860_030 Hb_000302_310--Hb_001860_030 Hb_000035_470 Hb_000035_470 Hb_000302_310--Hb_000035_470 Hb_004319_080 Hb_004319_080 Hb_000302_310--Hb_004319_080 Hb_000163_220 Hb_000163_220 Hb_000302_310--Hb_000163_220 Hb_000022_050 Hb_000022_050 Hb_000261_230--Hb_000022_050 Hb_003897_040 Hb_003897_040 Hb_000261_230--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000261_230--Hb_032990_010 Hb_005460_050 Hb_005460_050 Hb_000261_230--Hb_005460_050 Hb_005797_010 Hb_005797_010 Hb_000261_230--Hb_005797_010 Hb_002739_020 Hb_002739_020 Hb_000261_230--Hb_002739_020 Hb_033834_030 Hb_033834_030 Hb_001214_060--Hb_033834_030 Hb_005730_120 Hb_005730_120 Hb_001214_060--Hb_005730_120 Hb_000020_150 Hb_000020_150 Hb_001214_060--Hb_000020_150 Hb_001599_040 Hb_001599_040 Hb_001214_060--Hb_001599_040 Hb_002175_030 Hb_002175_030 Hb_001214_060--Hb_002175_030 Hb_002461_060 Hb_002461_060 Hb_011909_120--Hb_002461_060 Hb_007423_040 Hb_007423_040 Hb_011909_120--Hb_007423_040 Hb_011909_120--Hb_005730_120 Hb_011909_120--Hb_000126_010 Hb_002217_510 Hb_002217_510 Hb_011909_120--Hb_002217_510 Hb_000005_220 Hb_000005_220 Hb_000126_010--Hb_000005_220 Hb_002374_010 Hb_002374_010 Hb_000126_010--Hb_002374_010 Hb_002445_100 Hb_002445_100 Hb_000126_010--Hb_002445_100 Hb_000126_010--Hb_000163_220 Hb_063716_100 Hb_063716_100 Hb_000126_010--Hb_063716_100 Hb_000126_010--Hb_000302_310 Hb_001357_150 Hb_001357_150 Hb_022181_030--Hb_001357_150 Hb_007451_010 Hb_007451_010 Hb_022181_030--Hb_007451_010 Hb_022132_050 Hb_022132_050 Hb_022181_030--Hb_022132_050 Hb_002119_080 Hb_002119_080 Hb_022181_030--Hb_002119_080 Hb_006588_070 Hb_006588_070 Hb_022181_030--Hb_006588_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8605 9.75665 16.4909 17.3698 12.9335 17.635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9817 13.339 3.16035 14.2021 9.33238

CAGE analysis