Hb_001123_060

Information

Type -
Description -
Location Contig1123: 29664-38292
Sequence    

Annotation

kegg
ID rcu:RCOM_1437450
description cytochrome oxidase biogenesis protein, putative
nr
ID XP_012081302.1
description PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q0WUC5
description ALBINO3-like protein 3, mitochondrial OS=Arabidopsis thaliana GN=ALB3L3 PE=2 SV=1
trembl
ID A0A067KCT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18574 PE=4 SV=1
Gene Ontology
ID GO:0016021
description albino3-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03723: 29673-30142 , PASA_asmbl_03724: 30924-32535 , PASA_asmbl_03725: 33883-37908 , PASA_asmbl_03726: 37936-38280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_060 0.0 - - PREDICTED: ALBINO3-like protein 2, chloroplastic [Jatropha curcas]
2 Hb_010423_030 0.0688331437 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
3 Hb_000329_340 0.0800588089 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001278_100 0.0829110788 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
5 Hb_000032_380 0.0839718249 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003389_040 0.0852428829 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
7 Hb_001030_020 0.0875172032 - - Poly(A) polymerase alpha, putative [Ricinus communis]
8 Hb_004324_090 0.0880324077 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
9 Hb_000856_010 0.0896385977 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
10 Hb_089032_030 0.0898806695 - - PREDICTED: 3-isopropylmalate dehydrogenase 2, chloroplastic-like [Jatropha curcas]
11 Hb_008226_060 0.0900781052 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
12 Hb_000329_110 0.0918798628 - - PREDICTED: uncharacterized protein LOC105643142 [Jatropha curcas]
13 Hb_000614_250 0.0919415757 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
14 Hb_012022_040 0.0922946135 - - Protein SIS1, putative [Ricinus communis]
15 Hb_000221_190 0.0925745212 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
16 Hb_000327_230 0.0933130956 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
17 Hb_005074_030 0.0944276782 - - -
18 Hb_000430_020 0.0951664077 - - -
19 Hb_015807_150 0.0955490047 - - actin binding protein, putative [Ricinus communis]
20 Hb_010812_120 0.0956347721 - - hypothetical protein JCGZ_03293 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_060 Hb_001123_060 Hb_010423_030 Hb_010423_030 Hb_001123_060--Hb_010423_030 Hb_000329_340 Hb_000329_340 Hb_001123_060--Hb_000329_340 Hb_001278_100 Hb_001278_100 Hb_001123_060--Hb_001278_100 Hb_000032_380 Hb_000032_380 Hb_001123_060--Hb_000032_380 Hb_003389_040 Hb_003389_040 Hb_001123_060--Hb_003389_040 Hb_001030_020 Hb_001030_020 Hb_001123_060--Hb_001030_020 Hb_001470_030 Hb_001470_030 Hb_010423_030--Hb_001470_030 Hb_010423_030--Hb_001030_020 Hb_010423_030--Hb_001278_100 Hb_089032_030 Hb_089032_030 Hb_010423_030--Hb_089032_030 Hb_012022_040 Hb_012022_040 Hb_010423_030--Hb_012022_040 Hb_000614_250 Hb_000614_250 Hb_000329_340--Hb_000614_250 Hb_005188_080 Hb_005188_080 Hb_000329_340--Hb_005188_080 Hb_000856_010 Hb_000856_010 Hb_000329_340--Hb_000856_010 Hb_003777_320 Hb_003777_320 Hb_000329_340--Hb_003777_320 Hb_000329_340--Hb_010423_030 Hb_001278_100--Hb_012022_040 Hb_001278_100--Hb_000032_380 Hb_000270_310 Hb_000270_310 Hb_001278_100--Hb_000270_310 Hb_003582_060 Hb_003582_060 Hb_001278_100--Hb_003582_060 Hb_000390_300 Hb_000390_300 Hb_001278_100--Hb_000390_300 Hb_164010_040 Hb_164010_040 Hb_001278_100--Hb_164010_040 Hb_007101_300 Hb_007101_300 Hb_000032_380--Hb_007101_300 Hb_000032_380--Hb_003389_040 Hb_000417_040 Hb_000417_040 Hb_000032_380--Hb_000417_040 Hb_005054_350 Hb_005054_350 Hb_000032_380--Hb_005054_350 Hb_008226_060 Hb_008226_060 Hb_000032_380--Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_003389_040--Hb_007101_300 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_001030_020--Hb_001470_030 Hb_027380_050 Hb_027380_050 Hb_001030_020--Hb_027380_050 Hb_001245_100 Hb_001245_100 Hb_001030_020--Hb_001245_100 Hb_001163_050 Hb_001163_050 Hb_001030_020--Hb_001163_050 Hb_001157_040 Hb_001157_040 Hb_001030_020--Hb_001157_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.22609 5.81134 2.91354 6.0394 2.85808 4.06772
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.44544 9.97159 5.26703 4.50153 3.19316

CAGE analysis