Hb_001123_100

Information

Type -
Description -
Location Contig1123: 74756-79817
Sequence    

Annotation

kegg
ID rcu:RCOM_1437520
description hypothetical protein
nr
ID XP_012088765.1
description PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23128 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03728: 74791-75885 , PASA_asmbl_03729: 79384-79591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_100 0.0 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
2 Hb_005054_270 0.1713836583 - - -
3 Hb_000140_360 0.1728715095 - - PREDICTED: uncharacterized protein LOC105642906 [Jatropha curcas]
4 Hb_004162_180 0.1933117441 - - zinc finger protein, putative [Ricinus communis]
5 Hb_005162_100 0.1979282625 - - ATP binding protein, putative [Ricinus communis]
6 Hb_001102_210 0.2016311182 - - PREDICTED: alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like isoform X1 [Jatropha curcas]
7 Hb_006738_030 0.2031546934 - - Ras-related protein Rab7 [Morus notabilis]
8 Hb_001766_030 0.2074703439 - - hypothetical protein POPTR_0017s12640g [Populus trichocarpa]
9 Hb_000302_290 0.2153559394 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
10 Hb_083380_010 0.220631217 - - -
11 Hb_000997_190 0.2206449451 - - PREDICTED: magnesium transporter MRS2-I-like [Jatropha curcas]
12 Hb_013893_010 0.2254963416 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
13 Hb_001369_600 0.2290037027 - - kinase, putative [Ricinus communis]
14 Hb_001488_370 0.2293020235 - - Esterase PIR7B, putative [Ricinus communis]
15 Hb_004108_110 0.229513786 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006006_050 0.2298671425 - - PREDICTED: methylthioribose kinase-like [Gossypium raimondii]
17 Hb_001776_170 0.2324659535 - - conserved hypothetical protein [Ricinus communis]
18 Hb_025645_030 0.2344518323 - - -
19 Hb_002774_110 0.2347075071 - - heat shock protein binding protein, putative [Ricinus communis]
20 Hb_023344_050 0.2349404017 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_100 Hb_001123_100 Hb_005054_270 Hb_005054_270 Hb_001123_100--Hb_005054_270 Hb_000140_360 Hb_000140_360 Hb_001123_100--Hb_000140_360 Hb_004162_180 Hb_004162_180 Hb_001123_100--Hb_004162_180 Hb_005162_100 Hb_005162_100 Hb_001123_100--Hb_005162_100 Hb_001102_210 Hb_001102_210 Hb_001123_100--Hb_001102_210 Hb_006738_030 Hb_006738_030 Hb_001123_100--Hb_006738_030 Hb_006342_020 Hb_006342_020 Hb_005054_270--Hb_006342_020 Hb_000302_290 Hb_000302_290 Hb_005054_270--Hb_000302_290 Hb_005144_110 Hb_005144_110 Hb_005054_270--Hb_005144_110 Hb_001780_140 Hb_001780_140 Hb_005054_270--Hb_001780_140 Hb_005054_270--Hb_006738_030 Hb_000140_360--Hb_001102_210 Hb_002078_440 Hb_002078_440 Hb_000140_360--Hb_002078_440 Hb_000997_190 Hb_000997_190 Hb_000140_360--Hb_000997_190 Hb_002026_120 Hb_002026_120 Hb_000140_360--Hb_002026_120 Hb_117807_010 Hb_117807_010 Hb_000140_360--Hb_117807_010 Hb_000815_290 Hb_000815_290 Hb_000140_360--Hb_000815_290 Hb_025645_030 Hb_025645_030 Hb_004162_180--Hb_025645_030 Hb_001766_030 Hb_001766_030 Hb_004162_180--Hb_001766_030 Hb_000110_170 Hb_000110_170 Hb_004162_180--Hb_000110_170 Hb_003777_040 Hb_003777_040 Hb_004162_180--Hb_003777_040 Hb_001225_010 Hb_001225_010 Hb_004162_180--Hb_001225_010 Hb_012053_010 Hb_012053_010 Hb_004162_180--Hb_012053_010 Hb_005162_100--Hb_001102_210 Hb_000059_010 Hb_000059_010 Hb_005162_100--Hb_000059_010 Hb_005162_100--Hb_000815_290 Hb_083380_010 Hb_083380_010 Hb_005162_100--Hb_083380_010 Hb_005356_040 Hb_005356_040 Hb_005162_100--Hb_005356_040 Hb_001102_210--Hb_002078_440 Hb_013405_140 Hb_013405_140 Hb_001102_210--Hb_013405_140 Hb_001102_210--Hb_000059_010 Hb_000340_310 Hb_000340_310 Hb_001102_210--Hb_000340_310 Hb_001102_210--Hb_000815_290 Hb_000928_130 Hb_000928_130 Hb_006738_030--Hb_000928_130 Hb_006738_030--Hb_002026_120 Hb_001240_020 Hb_001240_020 Hb_006738_030--Hb_001240_020 Hb_003849_270 Hb_003849_270 Hb_006738_030--Hb_003849_270 Hb_147752_010 Hb_147752_010 Hb_006738_030--Hb_147752_010 Hb_006738_020 Hb_006738_020 Hb_006738_030--Hb_006738_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239016 1.10632 0.35956 1.28822 0.0722456 0.0996068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25849 9.94536 6.96924 2.64908 2.40276

CAGE analysis