Hb_001123_110

Information

Type -
Description -
Location Contig1123: 85492-86689
Sequence    

Annotation

kegg
ID rcu:RCOM_1437530
description hypothetical protein
nr
ID XP_002512625.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437530 PE=4 SV=1
Gene Ontology
ID GO:0016787
description conotoxin protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03730: 85743-86547 , PASA_asmbl_03732: 87221-87548
cDNA
(Sanger)
(ID:Location)		 027_I11.ab1: 85743-86360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_110 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_119583_020 0.1094077155 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
3 Hb_000959_190 0.1141449069 - - PREDICTED: crossover junction endonuclease EME1B-like [Jatropha curcas]
4 Hb_002498_240 0.1147320817 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
5 Hb_005511_130 0.1268313116 - - PREDICTED: transmembrane protein 115-like [Populus euphratica]
6 Hb_000984_220 0.1269582324 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
7 Hb_001160_110 0.1289327995 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
8 Hb_000120_350 0.1290760914 - - PREDICTED: uncharacterized protein LOC104422872 isoform X1 [Eucalyptus grandis]
9 Hb_029253_010 0.1336075078 - - PREDICTED: KH domain-containing protein SPIN1-like [Jatropha curcas]
10 Hb_001141_050 0.134486787 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
11 Hb_001195_640 0.1349930333 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
12 Hb_000915_130 0.1354776991 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
13 Hb_030545_010 0.1381493794 - - PREDICTED: uncharacterized protein LOC105648741 [Jatropha curcas]
14 Hb_003687_080 0.1400410168 - - PREDICTED: casein kinase I-like [Jatropha curcas]
15 Hb_001135_110 0.1406293417 - - -
16 Hb_012787_030 0.141007148 - - PREDICTED: dnaJ homolog subfamily B member 1 [Jatropha curcas]
17 Hb_000032_410 0.1418346878 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_000032_200 0.1426309682 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
19 Hb_005357_110 0.1451371967 - - hypothetical protein B456_002G083000 [Gossypium raimondii]
20 Hb_004730_020 0.1452021238 - - PREDICTED: uncharacterized protein LOC105641815 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_110 Hb_001123_110 Hb_119583_020 Hb_119583_020 Hb_001123_110--Hb_119583_020 Hb_000959_190 Hb_000959_190 Hb_001123_110--Hb_000959_190 Hb_002498_240 Hb_002498_240 Hb_001123_110--Hb_002498_240 Hb_005511_130 Hb_005511_130 Hb_001123_110--Hb_005511_130 Hb_000984_220 Hb_000984_220 Hb_001123_110--Hb_000984_220 Hb_001160_110 Hb_001160_110 Hb_001123_110--Hb_001160_110 Hb_006925_050 Hb_006925_050 Hb_119583_020--Hb_006925_050 Hb_018133_100 Hb_018133_100 Hb_119583_020--Hb_018133_100 Hb_119583_020--Hb_000984_220 Hb_001579_300 Hb_001579_300 Hb_119583_020--Hb_001579_300 Hb_007304_030 Hb_007304_030 Hb_119583_020--Hb_007304_030 Hb_000732_030 Hb_000732_030 Hb_000959_190--Hb_000732_030 Hb_000120_350 Hb_000120_350 Hb_000959_190--Hb_000120_350 Hb_000008_390 Hb_000008_390 Hb_000959_190--Hb_000008_390 Hb_000640_050 Hb_000640_050 Hb_000959_190--Hb_000640_050 Hb_004957_020 Hb_004957_020 Hb_000959_190--Hb_004957_020 Hb_005357_110 Hb_005357_110 Hb_002498_240--Hb_005357_110 Hb_002498_240--Hb_001160_110 Hb_004730_020 Hb_004730_020 Hb_002498_240--Hb_004730_020 Hb_074399_010 Hb_074399_010 Hb_002498_240--Hb_074399_010 Hb_003740_020 Hb_003740_020 Hb_002498_240--Hb_003740_020 Hb_005511_130--Hb_004730_020 Hb_003687_080 Hb_003687_080 Hb_005511_130--Hb_003687_080 Hb_000032_410 Hb_000032_410 Hb_005511_130--Hb_000032_410 Hb_005511_130--Hb_000984_220 Hb_000915_130 Hb_000915_130 Hb_005511_130--Hb_000915_130 Hb_005511_130--Hb_005357_110 Hb_000984_220--Hb_004730_020 Hb_000800_020 Hb_000800_020 Hb_000984_220--Hb_000800_020 Hb_000984_220--Hb_001160_110 Hb_000984_220--Hb_003687_080 Hb_004158_050 Hb_004158_050 Hb_000984_220--Hb_004158_050 Hb_001160_110--Hb_003687_080 Hb_003160_070 Hb_003160_070 Hb_001160_110--Hb_003160_070 Hb_001663_130 Hb_001663_130 Hb_001160_110--Hb_001663_130 Hb_002026_090 Hb_002026_090 Hb_001160_110--Hb_002026_090 Hb_001160_110--Hb_000032_410 Hb_001160_110--Hb_004158_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.54413 6.57185 25.9382 15.7366 2.74121 2.21885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32678 3.33711 1.88946 1.95016 6.76829

CAGE analysis