Hb_001123_120

Information

Type -
Description -
Location Contig1123: 86952-87629
Sequence    

Annotation

kegg
ID tcc:TCM_042776
description hypothetical protein
nr
ID XP_007009352.1
description Uncharacterized protein TCM_042776 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FNF9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_042776 PE=4 SV=1
Gene Ontology
ID GO:0009507
description growth hormone receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03731: 87004-87416
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_120 0.0 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
2 Hb_000085_330 0.0792397508 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
3 Hb_017862_010 0.0843546043 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
4 Hb_148930_010 0.0891022302 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
5 Hb_010172_030 0.0896896502 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
6 Hb_000236_460 0.0912103038 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
7 Hb_002781_020 0.091584588 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
8 Hb_001935_030 0.0921608127 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011689_050 0.0950606186 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
10 Hb_183086_040 0.0973425676 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
11 Hb_000212_260 0.0976081893 - - acyl-carrier-protein [Triadica sebifera]
12 Hb_008847_020 0.0996265261 - - 40S ribosomal protein S17C [Hevea brasiliensis]
13 Hb_002835_320 0.0999688657 - - 60S ribosomal protein L27B [Hevea brasiliensis]
14 Hb_002326_180 0.1013173009 - - Protein Z, putative [Ricinus communis]
15 Hb_000161_050 0.1016937793 - - conserved hypothetical protein [Ricinus communis]
16 Hb_034585_040 0.1057823384 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
17 Hb_001545_060 0.1069026281 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
18 Hb_003376_130 0.1076235734 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
19 Hb_000963_030 0.1084626472 - - PREDICTED: uncharacterized protein LOC105628095 [Jatropha curcas]
20 Hb_000922_100 0.1086104327 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_120 Hb_001123_120 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_000163_130 Hb_000163_130 Hb_000085_330--Hb_000163_130 Hb_002835_320 Hb_002835_320 Hb_000085_330--Hb_002835_320 Hb_000085_330--Hb_148930_010 Hb_183086_040 Hb_183086_040 Hb_000085_330--Hb_183086_040 Hb_000645_190 Hb_000645_190 Hb_000085_330--Hb_000645_190 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_000069_100 Hb_000069_100 Hb_017862_010--Hb_000069_100 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_148930_010--Hb_002835_320 Hb_001433_050 Hb_001433_050 Hb_148930_010--Hb_001433_050 Hb_001248_080 Hb_001248_080 Hb_148930_010--Hb_001248_080 Hb_003376_130 Hb_003376_130 Hb_148930_010--Hb_003376_130 Hb_148200_010 Hb_148200_010 Hb_148930_010--Hb_148200_010 Hb_003398_120 Hb_003398_120 Hb_148930_010--Hb_003398_120 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000236_460--Hb_000085_330 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.11695 1.92467 1.14644 3.91608 6.94834 11.1675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.7222 38.6058 16.7346 6.02414 1.11698

CAGE analysis