Hb_001123_160

Information

Type rubber biosynthesis
Description Gene Name: Pyruvate dehydrogenase
Location Contig1123: 117750-126924
Sequence    

Annotation

kegg
ID rcu:RCOM_1437610
description pyruvate dehydrogenase, putative (EC:1.2.4.1)
nr
ID XP_012088757.1
description PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q38799
description Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2
trembl
ID A0A067JTH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23123 PE=4 SV=1
Gene Ontology
ID GO:0004739
description pyruvate dehydrogenase e1 component subunit beta- mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03742: 117770-126893 , PASA_asmbl_03743: 117843-126295
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_160 0.0 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_008232_010 0.0628608512 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
3 Hb_003622_040 0.0630601416 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
4 Hb_003291_020 0.0814839546 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
5 Hb_148209_010 0.0833286149 - - RAS-related GTP-binding family protein [Populus trichocarpa]
6 Hb_000563_200 0.0861027338 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
7 Hb_000300_430 0.0867254711 - - PREDICTED: double-stranded RNA-binding protein 1-like [Jatropha curcas]
8 Hb_002016_080 0.0883901541 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
9 Hb_000428_060 0.0891253757 - - malate dehydrogenase, putative [Ricinus communis]
10 Hb_004800_100 0.0897273067 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000820_090 0.0913606773 - - -
12 Hb_003126_070 0.0922064284 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
13 Hb_011344_190 0.0927007322 - - PREDICTED: maspardin [Jatropha curcas]
14 Hb_000934_190 0.092933161 - - SER/ARG-rich protein 34A [Theobroma cacao]
15 Hb_000982_080 0.0961535705 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
16 Hb_001053_140 0.0964221701 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
17 Hb_010560_050 0.0964433752 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
18 Hb_004627_030 0.097057852 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
19 Hb_001410_060 0.0976713509 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
20 Hb_002303_060 0.0981614387 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001123_160 Hb_001123_160 Hb_008232_010 Hb_008232_010 Hb_001123_160--Hb_008232_010 Hb_003622_040 Hb_003622_040 Hb_001123_160--Hb_003622_040 Hb_003291_020 Hb_003291_020 Hb_001123_160--Hb_003291_020 Hb_148209_010 Hb_148209_010 Hb_001123_160--Hb_148209_010 Hb_000563_200 Hb_000563_200 Hb_001123_160--Hb_000563_200 Hb_000300_430 Hb_000300_430 Hb_001123_160--Hb_000300_430 Hb_000982_080 Hb_000982_080 Hb_008232_010--Hb_000982_080 Hb_011344_190 Hb_011344_190 Hb_008232_010--Hb_011344_190 Hb_004672_010 Hb_004672_010 Hb_008232_010--Hb_004672_010 Hb_008232_010--Hb_003622_040 Hb_015183_060 Hb_015183_060 Hb_008232_010--Hb_015183_060 Hb_005054_210 Hb_005054_210 Hb_003622_040--Hb_005054_210 Hb_000934_190 Hb_000934_190 Hb_003622_040--Hb_000934_190 Hb_003622_040--Hb_000300_430 Hb_003622_040--Hb_011344_190 Hb_003291_020--Hb_148209_010 Hb_000056_250 Hb_000056_250 Hb_003291_020--Hb_000056_250 Hb_000384_120 Hb_000384_120 Hb_003291_020--Hb_000384_120 Hb_003126_070 Hb_003126_070 Hb_003291_020--Hb_003126_070 Hb_003880_030 Hb_003880_030 Hb_003291_020--Hb_003880_030 Hb_002303_060 Hb_002303_060 Hb_148209_010--Hb_002303_060 Hb_000922_040 Hb_000922_040 Hb_148209_010--Hb_000922_040 Hb_148209_010--Hb_000563_200 Hb_148209_010--Hb_000384_120 Hb_001410_060 Hb_001410_060 Hb_000563_200--Hb_001410_060 Hb_145880_020 Hb_145880_020 Hb_000563_200--Hb_145880_020 Hb_001353_010 Hb_001353_010 Hb_000563_200--Hb_001353_010 Hb_003880_040 Hb_003880_040 Hb_000563_200--Hb_003880_040 Hb_004800_100 Hb_004800_100 Hb_000300_430--Hb_004800_100 Hb_000300_430--Hb_000982_080 Hb_000300_430--Hb_011344_190 Hb_000173_410 Hb_000173_410 Hb_000300_430--Hb_000173_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.784 12.7148 28.4057 58.3428 13.864 14.2999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.0806 69.4785 53.7825 46.9687 31.6947

CAGE analysis