Hb_001123_170

Information

Type -
Description -
Location Contig1123: 129329-135323
Sequence    

Annotation

kegg
ID rcu:RCOM_1437620
description hypothetical protein
nr
ID XP_002512634.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22799
description Uncharacterized protein At2g33490 OS=Arabidopsis thaliana GN=At2g33490 PE=4 SV=2
trembl
ID B9RFW5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1437620 PE=4 SV=1
Gene Ontology
ID GO:0044464
description hydroxyproline-rich glycoprotein family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03744: 129362-130082 , PASA_asmbl_03745: 130919-133727 , PASA_asmbl_03747: 134262-134421 , PASA_asmbl_03748: 134550-136802
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003656_170 0.0745303057 - - PREDICTED: phenylalanine ammonia-lyase-like [Jatropha curcas]
3 Hb_001377_130 0.0817069653 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
4 Hb_004544_090 0.0861010196 - - cytochrome P450, putative [Ricinus communis]
5 Hb_000382_030 0.0939290427 transcription factor TF Family: bHLH hypothetical protein POPTR_0018s11800g [Populus trichocarpa]
6 Hb_000477_110 0.103213504 transcription factor TF Family: GRAS PREDICTED: DELLA protein SLR1-like [Jatropha curcas]
7 Hb_002078_250 0.1036093624 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004306_140 0.1040262173 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_023386_050 0.104128391 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007894_030 0.1046082833 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_000411_050 0.1101989488 - - hypothetical protein AMTR_s00066p00166230 [Amborella trichopoda]
12 Hb_001538_050 0.1114131296 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
13 Hb_014361_020 0.1122245745 - - PREDICTED: probable protein phosphatase 2C 78 [Jatropha curcas]
14 Hb_002324_050 0.1133008659 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
15 Hb_012098_180 0.1139341343 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_002343_020 0.1142018649 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
17 Hb_004166_020 0.1177456057 - - -
18 Hb_064985_010 0.1189215933 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
19 Hb_006483_090 0.1202393082 - - PREDICTED: uncharacterized protein LOC105639979 [Jatropha curcas]
20 Hb_000237_070 0.1219029514 - - Purple acid phosphatase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001123_170 Hb_001123_170 Hb_003656_170 Hb_003656_170 Hb_001123_170--Hb_003656_170 Hb_001377_130 Hb_001377_130 Hb_001123_170--Hb_001377_130 Hb_004544_090 Hb_004544_090 Hb_001123_170--Hb_004544_090 Hb_000382_030 Hb_000382_030 Hb_001123_170--Hb_000382_030 Hb_000477_110 Hb_000477_110 Hb_001123_170--Hb_000477_110 Hb_002078_250 Hb_002078_250 Hb_001123_170--Hb_002078_250 Hb_002324_050 Hb_002324_050 Hb_003656_170--Hb_002324_050 Hb_003656_170--Hb_002078_250 Hb_003964_010 Hb_003964_010 Hb_003656_170--Hb_003964_010 Hb_004306_140 Hb_004306_140 Hb_003656_170--Hb_004306_140 Hb_050236_010 Hb_050236_010 Hb_003656_170--Hb_050236_010 Hb_001377_130--Hb_000382_030 Hb_000237_070 Hb_000237_070 Hb_001377_130--Hb_000237_070 Hb_000318_050 Hb_000318_050 Hb_001377_130--Hb_000318_050 Hb_005628_050 Hb_005628_050 Hb_001377_130--Hb_005628_050 Hb_001538_050 Hb_001538_050 Hb_001377_130--Hb_001538_050 Hb_000411_050 Hb_000411_050 Hb_004544_090--Hb_000411_050 Hb_002276_100 Hb_002276_100 Hb_004544_090--Hb_002276_100 Hb_020285_010 Hb_020285_010 Hb_004544_090--Hb_020285_010 Hb_006002_010 Hb_006002_010 Hb_004544_090--Hb_006002_010 Hb_007894_030 Hb_007894_030 Hb_004544_090--Hb_007894_030 Hb_000382_030--Hb_000237_070 Hb_000382_030--Hb_000318_050 Hb_000085_220 Hb_000085_220 Hb_000382_030--Hb_000085_220 Hb_031862_020 Hb_031862_020 Hb_000382_030--Hb_031862_020 Hb_006483_090 Hb_006483_090 Hb_000477_110--Hb_006483_090 Hb_000472_020 Hb_000472_020 Hb_000477_110--Hb_000472_020 Hb_006269_010 Hb_006269_010 Hb_000477_110--Hb_006269_010 Hb_001956_080 Hb_001956_080 Hb_000477_110--Hb_001956_080 Hb_001153_090 Hb_001153_090 Hb_000477_110--Hb_001153_090 Hb_000613_250 Hb_000613_250 Hb_000477_110--Hb_000613_250 Hb_002078_250--Hb_000411_050 Hb_002078_250--Hb_003964_010 Hb_002078_250--Hb_004544_090 Hb_003025_150 Hb_003025_150 Hb_002078_250--Hb_003025_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0706051 11.7534 6.46714 6.85343 0.146402 0.294092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0461085 0.0906982 0.206283 5.87552 3.908

CAGE analysis