Hb_001123_190

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1123: 144469-147700
Sequence    

Annotation

kegg
ID rcu:RCOM_1437660
description hypothetical protein
nr
ID XP_012088747.1
description PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
swissprot
ID O22800
description Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2
trembl
ID A0A067JHF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23120 PE=4 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 14-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03749: 144334-147564
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_190 0.0 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Jatropha curcas]
2 Hb_004032_090 0.1132958154 - - PREDICTED: protein AIG1 [Jatropha curcas]
3 Hb_110558_010 0.1161461938 - - PREDICTED: uncharacterized protein LOC105641877 [Jatropha curcas]
4 Hb_048476_040 0.1187073569 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
5 Hb_012366_050 0.120884791 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
6 Hb_026698_020 0.1274681479 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_083078_010 0.1276600357 - - Splicing factor, arginine/serine-rich, putative [Ricinus communis]
8 Hb_001514_240 0.1286166733 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
9 Hb_000161_240 0.1305543503 - - PREDICTED: ion channel DMI1-like isoform X1 [Jatropha curcas]
10 Hb_054865_050 0.1381354335 - - calcium-dependent protein kinase, putative [Ricinus communis]
11 Hb_024714_070 0.1390567492 - - PREDICTED: uncharacterized protein LOC105642502 [Jatropha curcas]
12 Hb_000008_430 0.1402862096 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
13 Hb_000258_090 0.1405797373 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
14 Hb_000094_250 0.1432140502 - - PREDICTED: uncharacterized protein LOC105633774 isoform X3 [Jatropha curcas]
15 Hb_002411_160 0.1447662148 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
16 Hb_007290_070 0.1448428462 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
17 Hb_003226_090 0.1453754525 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
18 Hb_000165_070 0.146300286 - - hypothetical protein JCGZ_01211 [Jatropha curcas]
19 Hb_005504_030 0.1463546287 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
20 Hb_000072_020 0.1464809726 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001123_190 Hb_001123_190 Hb_004032_090 Hb_004032_090 Hb_001123_190--Hb_004032_090 Hb_110558_010 Hb_110558_010 Hb_001123_190--Hb_110558_010 Hb_048476_040 Hb_048476_040 Hb_001123_190--Hb_048476_040 Hb_012366_050 Hb_012366_050 Hb_001123_190--Hb_012366_050 Hb_026698_020 Hb_026698_020 Hb_001123_190--Hb_026698_020 Hb_083078_010 Hb_083078_010 Hb_001123_190--Hb_083078_010 Hb_000008_430 Hb_000008_430 Hb_004032_090--Hb_000008_430 Hb_002343_020 Hb_002343_020 Hb_004032_090--Hb_002343_020 Hb_000009_150 Hb_000009_150 Hb_004032_090--Hb_000009_150 Hb_004032_090--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_004032_090--Hb_006052_060 Hb_110558_010--Hb_012366_050 Hb_003226_090 Hb_003226_090 Hb_110558_010--Hb_003226_090 Hb_005504_030 Hb_005504_030 Hb_110558_010--Hb_005504_030 Hb_054865_050 Hb_054865_050 Hb_110558_010--Hb_054865_050 Hb_110558_010--Hb_004032_090 Hb_005064_070 Hb_005064_070 Hb_048476_040--Hb_005064_070 Hb_132840_020 Hb_132840_020 Hb_048476_040--Hb_132840_020 Hb_000329_790 Hb_000329_790 Hb_048476_040--Hb_000329_790 Hb_005080_020 Hb_005080_020 Hb_048476_040--Hb_005080_020 Hb_048476_040--Hb_054865_050 Hb_001294_050 Hb_001294_050 Hb_048476_040--Hb_001294_050 Hb_009449_100 Hb_009449_100 Hb_012366_050--Hb_009449_100 Hb_012366_050--Hb_026698_020 Hb_001514_240 Hb_001514_240 Hb_012366_050--Hb_001514_240 Hb_012366_050--Hb_048476_040 Hb_026698_020--Hb_001514_240 Hb_000417_410 Hb_000417_410 Hb_026698_020--Hb_000417_410 Hb_026698_020--Hb_009449_100 Hb_002888_040 Hb_002888_040 Hb_026698_020--Hb_002888_040 Hb_001195_230 Hb_001195_230 Hb_026698_020--Hb_001195_230 Hb_132840_030 Hb_132840_030 Hb_026698_020--Hb_132840_030 Hb_007290_070 Hb_007290_070 Hb_083078_010--Hb_007290_070 Hb_115513_040 Hb_115513_040 Hb_083078_010--Hb_115513_040 Hb_000227_320 Hb_000227_320 Hb_083078_010--Hb_000227_320 Hb_001205_180 Hb_001205_180 Hb_083078_010--Hb_001205_180 Hb_004096_220 Hb_004096_220 Hb_083078_010--Hb_004096_220 Hb_005288_050 Hb_005288_050 Hb_083078_010--Hb_005288_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.15998 23.0123 24.6939 13.6504 2.3901 1.3738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.42684 1.3904 4.88134 18.9032 12.5618

CAGE analysis