Hb_001123_210

Information

Type -
Description -
Location Contig1123: 155731-157559
Sequence    

Annotation

kegg
ID rcu:RCOM_1437780
description hypothetical protein
nr
ID XP_012088745.1
description PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JTH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23118 PE=4 SV=1
Gene Ontology
ID GO:0005515
description humj1 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03752: 155798-157206
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_210 0.0 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
2 Hb_010897_030 0.1353033139 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002341_020 0.1376539903 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
4 Hb_002774_050 0.1438593157 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
5 Hb_000072_210 0.1445596867 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
6 Hb_007192_100 0.1478893933 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
7 Hb_004052_050 0.1597285785 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
8 Hb_050806_010 0.1599759496 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
9 Hb_008226_080 0.1607836332 - - Protein LRP16, putative [Ricinus communis]
10 Hb_029904_040 0.1614225385 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
11 Hb_002603_060 0.1649205892 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
12 Hb_158092_010 0.1653301635 - - CYP51 [Hevea brasiliensis]
13 Hb_001242_050 0.1701592132 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001005_080 0.1703804601 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
15 Hb_003462_120 0.1704651107 - - Acidic endochitinase [Theobroma cacao]
16 Hb_015807_100 0.1711309041 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_010050_050 0.1718292932 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
18 Hb_002636_080 0.1739465655 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
19 Hb_152910_020 0.1766082857 - - PREDICTED: lactoylglutathione lyase-like [Jatropha curcas]
20 Hb_000392_380 0.1781399931 - - ubiquitin-conjugating enzyme [Medicago truncatula]

Gene co-expression network

sample Hb_001123_210 Hb_001123_210 Hb_010897_030 Hb_010897_030 Hb_001123_210--Hb_010897_030 Hb_002341_020 Hb_002341_020 Hb_001123_210--Hb_002341_020 Hb_002774_050 Hb_002774_050 Hb_001123_210--Hb_002774_050 Hb_000072_210 Hb_000072_210 Hb_001123_210--Hb_000072_210 Hb_007192_100 Hb_007192_100 Hb_001123_210--Hb_007192_100 Hb_004052_050 Hb_004052_050 Hb_001123_210--Hb_004052_050 Hb_000635_140 Hb_000635_140 Hb_010897_030--Hb_000635_140 Hb_002603_060 Hb_002603_060 Hb_010897_030--Hb_002603_060 Hb_023536_010 Hb_023536_010 Hb_010897_030--Hb_023536_010 Hb_029904_040 Hb_029904_040 Hb_010897_030--Hb_029904_040 Hb_000896_120 Hb_000896_120 Hb_010897_030--Hb_000896_120 Hb_002636_080 Hb_002636_080 Hb_002341_020--Hb_002636_080 Hb_021888_050 Hb_021888_050 Hb_002341_020--Hb_021888_050 Hb_000975_360 Hb_000975_360 Hb_002341_020--Hb_000975_360 Hb_116608_010 Hb_116608_010 Hb_002341_020--Hb_116608_010 Hb_002042_130 Hb_002042_130 Hb_002341_020--Hb_002042_130 Hb_050806_010 Hb_050806_010 Hb_002774_050--Hb_050806_010 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_000178_120 Hb_000178_120 Hb_002774_050--Hb_000178_120 Hb_001357_120 Hb_001357_120 Hb_002774_050--Hb_001357_120 Hb_010402_050 Hb_010402_050 Hb_002774_050--Hb_010402_050 Hb_010560_030 Hb_010560_030 Hb_000072_210--Hb_010560_030 Hb_000327_380 Hb_000327_380 Hb_000072_210--Hb_000327_380 Hb_000923_090 Hb_000923_090 Hb_000072_210--Hb_000923_090 Hb_000390_140 Hb_000390_140 Hb_000072_210--Hb_000390_140 Hb_000072_210--Hb_004052_050 Hb_001172_120 Hb_001172_120 Hb_007192_100--Hb_001172_120 Hb_001005_080 Hb_001005_080 Hb_007192_100--Hb_001005_080 Hb_015807_100 Hb_015807_100 Hb_007192_100--Hb_015807_100 Hb_000115_230 Hb_000115_230 Hb_007192_100--Hb_000115_230 Hb_152910_020 Hb_152910_020 Hb_007192_100--Hb_152910_020 Hb_000384_120 Hb_000384_120 Hb_007192_100--Hb_000384_120 Hb_009486_020 Hb_009486_020 Hb_004052_050--Hb_009486_020 Hb_018124_010 Hb_018124_010 Hb_004052_050--Hb_018124_010 Hb_000805_240 Hb_000805_240 Hb_004052_050--Hb_000805_240 Hb_001247_100 Hb_001247_100 Hb_004052_050--Hb_001247_100 Hb_152784_010 Hb_152784_010 Hb_004052_050--Hb_152784_010 Hb_004052_050--Hb_007192_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76753 21.168 12.0457 35.3568 3.12194 8.68381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.4721 52.5789 45.6658 15.899 2.62062

CAGE analysis