Hb_001123_310

Information

Type -
Description -
Location Contig1123: 281448-286390
Sequence    

Annotation

kegg
ID tcc:TCM_008390
description Uncharacterized protein isoform 1
nr
ID XP_012088735.1
description PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
swissprot
ID Q8RWD5
description Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana GN=SCD2 PE=1 SV=1
trembl
ID A0A067JUS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23107 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03766: 280216-280830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_310 0.0 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
2 Hb_000120_300 0.0755884114 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
3 Hb_000207_350 0.0871663772 - - PREDICTED: embryogenesis-associated protein EMB8 [Jatropha curcas]
4 Hb_000483_080 0.0884009046 - - hypothetical protein CISIN_1g000833mg [Citrus sinensis]
5 Hb_002965_160 0.1015835231 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
6 Hb_010381_040 0.1098511085 - - beta-galactosidase, putative [Ricinus communis]
7 Hb_006133_020 0.112476573 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
8 Hb_004855_020 0.1128459192 - - hypothetical protein POPTR_0006s10010g [Populus trichocarpa]
9 Hb_008511_040 0.1133050569 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
10 Hb_010868_040 0.1178305348 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
11 Hb_007943_180 0.1198815888 - - PREDICTED: uncharacterized protein LOC105637734 [Jatropha curcas]
12 Hb_001377_530 0.1203565518 - - NC domain-containing family protein [Populus trichocarpa]
13 Hb_004531_080 0.1205515114 - - hypothetical protein RCOM_1491960 [Ricinus communis]
14 Hb_011174_040 0.1238574863 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001141_050 0.1249651 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 2 isoform X2 [Jatropha curcas]
16 Hb_000088_240 0.1252462434 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_000735_060 0.1253106296 - - PREDICTED: U-box domain-containing protein 9 [Jatropha curcas]
18 Hb_000227_400 0.1283573127 - - lipoxygenase, putative [Ricinus communis]
19 Hb_000465_410 0.1308760466 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005144_060 0.1317307711 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_001123_310 Hb_001123_310 Hb_000120_300 Hb_000120_300 Hb_001123_310--Hb_000120_300 Hb_000207_350 Hb_000207_350 Hb_001123_310--Hb_000207_350 Hb_000483_080 Hb_000483_080 Hb_001123_310--Hb_000483_080 Hb_002965_160 Hb_002965_160 Hb_001123_310--Hb_002965_160 Hb_010381_040 Hb_010381_040 Hb_001123_310--Hb_010381_040 Hb_006133_020 Hb_006133_020 Hb_001123_310--Hb_006133_020 Hb_000120_300--Hb_000483_080 Hb_021346_050 Hb_021346_050 Hb_000120_300--Hb_021346_050 Hb_000120_300--Hb_000207_350 Hb_000088_240 Hb_000088_240 Hb_000120_300--Hb_000088_240 Hb_010868_040 Hb_010868_040 Hb_000120_300--Hb_010868_040 Hb_004855_020 Hb_004855_020 Hb_000207_350--Hb_004855_020 Hb_001104_150 Hb_001104_150 Hb_000207_350--Hb_001104_150 Hb_000207_350--Hb_010868_040 Hb_000207_350--Hb_010381_040 Hb_005568_020 Hb_005568_020 Hb_000207_350--Hb_005568_020 Hb_000077_110 Hb_000077_110 Hb_000483_080--Hb_000077_110 Hb_004531_080 Hb_004531_080 Hb_000483_080--Hb_004531_080 Hb_002871_130 Hb_002871_130 Hb_000483_080--Hb_002871_130 Hb_002284_260 Hb_002284_260 Hb_000483_080--Hb_002284_260 Hb_001862_050 Hb_001862_050 Hb_002965_160--Hb_001862_050 Hb_008511_040 Hb_008511_040 Hb_002965_160--Hb_008511_040 Hb_002965_160--Hb_006133_020 Hb_006289_020 Hb_006289_020 Hb_002965_160--Hb_006289_020 Hb_001188_050 Hb_001188_050 Hb_002965_160--Hb_001188_050 Hb_010381_040--Hb_004855_020 Hb_010381_040--Hb_010868_040 Hb_000243_060 Hb_000243_060 Hb_010381_040--Hb_000243_060 Hb_002701_070 Hb_002701_070 Hb_010381_040--Hb_002701_070 Hb_006133_020--Hb_008511_040 Hb_003020_190 Hb_003020_190 Hb_006133_020--Hb_003020_190 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.752789 2.54496 18.5656 12.2635 0.656834 0.681043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.764417 0.616915 0.792191 4.32093 6.6398

CAGE analysis