Hb_001123_320

Information

Type -
Description -
Location Contig1123: 287136-291667
Sequence    

Annotation

kegg
ID rcu:RCOM_1734200
description RNA binding protein, putative
nr
ID XP_012088733.1
description PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JKF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23106 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03769: 287132-287593 , PASA_asmbl_03770: 288636-289154 , PASA_asmbl_03771: 289177-289969 , PASA_asmbl_03772: 289970-291529
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_320 0.0 - - PREDICTED: uncharacterized protein LOC105647314 isoform X3 [Jatropha curcas]
2 Hb_000011_400 0.0943347669 transcription factor TF Family: ERF ethylene-responsive transcription factor 4 [Hevea brasiliensis]
3 Hb_010883_090 0.0958884341 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
4 Hb_006114_010 0.1042394841 - - PREDICTED: uncharacterized protein LOC105629068 [Jatropha curcas]
5 Hb_003994_060 0.109574314 - - PREDICTED: uncharacterized protein LOC105646110 isoform X3 [Jatropha curcas]
6 Hb_000840_250 0.1160250018 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
7 Hb_000483_260 0.1167520094 - - PREDICTED: dihydroorotase, mitochondrial isoform X1 [Populus euphratica]
8 Hb_009620_020 0.1186881784 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001633_210 0.1199366989 - - PREDICTED: RING finger protein 10 isoform X2 [Jatropha curcas]
10 Hb_001892_020 0.1210794298 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_000185_030 0.1216494822 - - PREDICTED: arginine-glutamic acid dipeptide repeats protein-like isoform X2 [Jatropha curcas]
12 Hb_002631_060 0.1217629653 - - PREDICTED: uncharacterized protein LOC105646151 [Jatropha curcas]
13 Hb_000787_020 0.1236254918 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_005539_280 0.126180771 - - PREDICTED: uncharacterized protein LOC105644562 [Jatropha curcas]
15 Hb_000696_040 0.1263024331 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_003044_030 0.1281776737 - - PREDICTED: probable serine/threonine-protein kinase WNK11 [Cicer arietinum]
17 Hb_005731_130 0.1288676198 - - PREDICTED: probable metal-nicotianamine transporter YSL6 [Jatropha curcas]
18 Hb_001021_080 0.1289799908 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
19 Hb_000297_010 0.1293239834 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
20 Hb_007416_320 0.1304577975 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001123_320 Hb_001123_320 Hb_000011_400 Hb_000011_400 Hb_001123_320--Hb_000011_400 Hb_010883_090 Hb_010883_090 Hb_001123_320--Hb_010883_090 Hb_006114_010 Hb_006114_010 Hb_001123_320--Hb_006114_010 Hb_003994_060 Hb_003994_060 Hb_001123_320--Hb_003994_060 Hb_000840_250 Hb_000840_250 Hb_001123_320--Hb_000840_250 Hb_000483_260 Hb_000483_260 Hb_001123_320--Hb_000483_260 Hb_009620_020 Hb_009620_020 Hb_000011_400--Hb_009620_020 Hb_001840_090 Hb_001840_090 Hb_000011_400--Hb_001840_090 Hb_000363_210 Hb_000363_210 Hb_000011_400--Hb_000363_210 Hb_000225_060 Hb_000225_060 Hb_000011_400--Hb_000225_060 Hb_000011_400--Hb_003994_060 Hb_002631_060 Hb_002631_060 Hb_010883_090--Hb_002631_060 Hb_010883_090--Hb_003994_060 Hb_000805_020 Hb_000805_020 Hb_010883_090--Hb_000805_020 Hb_003687_240 Hb_003687_240 Hb_010883_090--Hb_003687_240 Hb_001892_020 Hb_001892_020 Hb_010883_090--Hb_001892_020 Hb_004907_110 Hb_004907_110 Hb_010883_090--Hb_004907_110 Hb_000120_470 Hb_000120_470 Hb_006114_010--Hb_000120_470 Hb_006114_010--Hb_010883_090 Hb_005539_280 Hb_005539_280 Hb_006114_010--Hb_005539_280 Hb_086639_030 Hb_086639_030 Hb_006114_010--Hb_086639_030 Hb_006114_010--Hb_000805_020 Hb_000976_170 Hb_000976_170 Hb_006114_010--Hb_000976_170 Hb_000189_560 Hb_000189_560 Hb_003994_060--Hb_000189_560 Hb_000185_030 Hb_000185_030 Hb_003994_060--Hb_000185_030 Hb_001021_080 Hb_001021_080 Hb_003994_060--Hb_001021_080 Hb_008770_030 Hb_008770_030 Hb_003994_060--Hb_008770_030 Hb_004705_140 Hb_004705_140 Hb_003994_060--Hb_004705_140 Hb_001633_210 Hb_001633_210 Hb_000840_250--Hb_001633_210 Hb_000614_250 Hb_000614_250 Hb_000840_250--Hb_000614_250 Hb_000297_010 Hb_000297_010 Hb_000840_250--Hb_000297_010 Hb_001014_030 Hb_001014_030 Hb_000840_250--Hb_001014_030 Hb_000840_250--Hb_000185_030 Hb_000230_390 Hb_000230_390 Hb_000840_250--Hb_000230_390 Hb_000460_030 Hb_000460_030 Hb_000483_260--Hb_000460_030 Hb_003994_260 Hb_003994_260 Hb_000483_260--Hb_003994_260 Hb_000787_020 Hb_000787_020 Hb_000483_260--Hb_000787_020 Hb_001218_030 Hb_001218_030 Hb_000483_260--Hb_001218_030 Hb_005306_180 Hb_005306_180 Hb_000483_260--Hb_005306_180 Hb_001314_070 Hb_001314_070 Hb_000483_260--Hb_001314_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.28026 3.31826 2.16034 2.83009 2.71985 2.361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.688 4.67371 6.40958 5.14228 0.782217

CAGE analysis