Hb_001123_340

Information

Type -
Description -
Location Contig1123: 299026-303133
Sequence    

Annotation

kegg
ID rcu:RCOM_1438150
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_011020863.1
description PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067JH81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23104 PE=4 SV=1
Gene Ontology
ID GO:0015995
description pentatricopeptide repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03775: 299075-299941 , PASA_asmbl_03777: 301197-303418 , PASA_asmbl_03778: 303009-303144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001123_340 0.0 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
2 Hb_001218_060 0.067960011 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000282_010 0.0718566419 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001926_010 0.07719323 - - hypothetical protein Csa_2G383910 [Cucumis sativus]
5 Hb_089736_010 0.080180099 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
6 Hb_000187_100 0.081359461 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
7 Hb_000264_160 0.0821586551 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
8 Hb_005365_040 0.0923794173 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
9 Hb_000431_080 0.0935998737 - - PREDICTED: uncharacterized protein LOC105632547 [Jatropha curcas]
10 Hb_078954_020 0.094921909 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
11 Hb_088118_010 0.0955838962 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
12 Hb_004223_120 0.0966033261 - - PREDICTED: protein SPA, chloroplastic [Jatropha curcas]
13 Hb_054615_010 0.0990053787 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
14 Hb_003077_010 0.0994935563 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_104014_010 0.1059986975 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
16 Hb_000152_650 0.1088532058 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_001921_040 0.1095220291 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 23 [Jatropha curcas]
18 Hb_000051_150 0.1101834504 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
19 Hb_031862_190 0.1105608204 - - -
20 Hb_005511_080 0.1131453428 - - Protein MLO, putative [Ricinus communis]

Gene co-expression network

sample Hb_001123_340 Hb_001123_340 Hb_001218_060 Hb_001218_060 Hb_001123_340--Hb_001218_060 Hb_000282_010 Hb_000282_010 Hb_001123_340--Hb_000282_010 Hb_001926_010 Hb_001926_010 Hb_001123_340--Hb_001926_010 Hb_089736_010 Hb_089736_010 Hb_001123_340--Hb_089736_010 Hb_000187_100 Hb_000187_100 Hb_001123_340--Hb_000187_100 Hb_000264_160 Hb_000264_160 Hb_001123_340--Hb_000264_160 Hb_001218_060--Hb_000282_010 Hb_078954_020 Hb_078954_020 Hb_001218_060--Hb_078954_020 Hb_005511_080 Hb_005511_080 Hb_001218_060--Hb_005511_080 Hb_012084_010 Hb_012084_010 Hb_001218_060--Hb_012084_010 Hb_003077_010 Hb_003077_010 Hb_001218_060--Hb_003077_010 Hb_000282_010--Hb_078954_020 Hb_000282_010--Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_000282_010--Hb_001921_040 Hb_088118_010 Hb_088118_010 Hb_000282_010--Hb_088118_010 Hb_001926_010--Hb_001921_040 Hb_002235_260 Hb_002235_260 Hb_001926_010--Hb_002235_260 Hb_019762_030 Hb_019762_030 Hb_001926_010--Hb_019762_030 Hb_004117_060 Hb_004117_060 Hb_001926_010--Hb_004117_060 Hb_054615_010 Hb_054615_010 Hb_089736_010--Hb_054615_010 Hb_089736_010--Hb_088118_010 Hb_074240_030 Hb_074240_030 Hb_089736_010--Hb_074240_030 Hb_089736_010--Hb_001926_010 Hb_003387_010 Hb_003387_010 Hb_089736_010--Hb_003387_010 Hb_004223_120 Hb_004223_120 Hb_000187_100--Hb_004223_120 Hb_031862_190 Hb_031862_190 Hb_000187_100--Hb_031862_190 Hb_003411_070 Hb_003411_070 Hb_000187_100--Hb_003411_070 Hb_005365_040 Hb_005365_040 Hb_000187_100--Hb_005365_040 Hb_003702_010 Hb_003702_010 Hb_000187_100--Hb_003702_010 Hb_000431_080 Hb_000431_080 Hb_000187_100--Hb_000431_080 Hb_000152_650 Hb_000152_650 Hb_000264_160--Hb_000152_650 Hb_000264_160--Hb_000431_080 Hb_000264_160--Hb_003077_010 Hb_000264_160--Hb_005365_040 Hb_104014_010 Hb_104014_010 Hb_000264_160--Hb_104014_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.7586 47.0755 4.73808 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0648987 0.0255283 0 0.122336 9.11958

CAGE analysis