Hb_001124_080

Information

Type -
Description -
Location Contig1124: 143253-144280
Sequence    

Annotation

kegg
ID vvi:100257302
description acyl carrier protein 1, chloroplastic-like
nr
ID P52412.1
description RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
swissprot
ID P52412
description Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1
trembl
ID A0A067L696
description Acyl carrier protein OS=Jatropha curcas GN=JCGZ_02028 PE=3 SV=1
Gene Ontology
ID GO:0009536
description acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03798: 142993-146826 , PASA_asmbl_03800: 143117-146889
cDNA
(Sanger)
(ID:Location)		 008_E24.ab1: 143133-146830 , 015_J22.ab1: 143117-146889 , 018_D19.ab1: 145242-146821 , 022_B06.ab1: 143154-146718 , 030_F05.ab1: 143117-146826 , 041_L18.ab1: 143125-146826 , 043_E14.ab1: 143119-146825 , 043_O17.ab1: 143113-146722 , 044_D04.ab1: 143119-146825 , 044_N16.ab1: 143097-146826 , 048_L08.ab1: 143005-146722 , 050_G15.ab1: 143113-146722 , 050_I22.ab1: 143155-146826 , 050_N14.ab1: 143199-146826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_080 0.0 - - RecName: Full=Acyl carrier protein 2, chloroplastic; Short=ACP; Flags: Precursor [Cuphea lanceolata]
2 Hb_001266_080 0.0840350118 - - PREDICTED: eukaryotic translation initiation factor 2 subunit gamma-like [Jatropha curcas]
3 Hb_000284_110 0.0972283776 - - PREDICTED: bromodomain-containing protein 3 [Jatropha curcas]
4 Hb_071736_010 0.0990987164 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
5 Hb_004072_020 0.1076566569 - - PREDICTED: uncharacterized protein LOC105635274 [Jatropha curcas]
6 Hb_004055_140 0.109409685 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
7 Hb_002616_050 0.1136519382 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
8 Hb_000365_310 0.1143029005 - - auxin:hydrogen symporter, putative [Ricinus communis]
9 Hb_009117_030 0.1158711301 - - PREDICTED: histidine protein methyltransferase 1 homolog isoform X2 [Jatropha curcas]
10 Hb_002023_020 0.1177839546 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
11 Hb_006921_030 0.118290788 - - PREDICTED: uncharacterized protein LOC105638271 [Jatropha curcas]
12 Hb_000347_200 0.1192303148 - - lsm1, putative [Ricinus communis]
13 Hb_000914_070 0.1198516662 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 8 [Jatropha curcas]
14 Hb_001998_230 0.1205983906 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
15 Hb_006198_080 0.122480195 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
16 Hb_001673_010 0.1240123561 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]
17 Hb_000023_140 0.1242930439 - - PREDICTED: cadmium-induced protein AS8 isoform X1 [Jatropha curcas]
18 Hb_002112_040 0.1246694375 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
19 Hb_148644_010 0.1265569859 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
20 Hb_002477_330 0.126868257 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_001124_080 Hb_001124_080 Hb_001266_080 Hb_001266_080 Hb_001124_080--Hb_001266_080 Hb_000284_110 Hb_000284_110 Hb_001124_080--Hb_000284_110 Hb_071736_010 Hb_071736_010 Hb_001124_080--Hb_071736_010 Hb_004072_020 Hb_004072_020 Hb_001124_080--Hb_004072_020 Hb_004055_140 Hb_004055_140 Hb_001124_080--Hb_004055_140 Hb_002616_050 Hb_002616_050 Hb_001124_080--Hb_002616_050 Hb_001266_080--Hb_071736_010 Hb_007426_030 Hb_007426_030 Hb_001266_080--Hb_007426_030 Hb_001266_080--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_001266_080--Hb_009117_030 Hb_000914_070 Hb_000914_070 Hb_001266_080--Hb_000914_070 Hb_024714_100 Hb_024714_100 Hb_000284_110--Hb_024714_100 Hb_011689_020 Hb_011689_020 Hb_000284_110--Hb_011689_020 Hb_000045_090 Hb_000045_090 Hb_000284_110--Hb_000045_090 Hb_000284_110--Hb_002616_050 Hb_000395_170 Hb_000395_170 Hb_000284_110--Hb_000395_170 Hb_000166_110 Hb_000166_110 Hb_000284_110--Hb_000166_110 Hb_005883_050 Hb_005883_050 Hb_071736_010--Hb_005883_050 Hb_005754_060 Hb_005754_060 Hb_071736_010--Hb_005754_060 Hb_000023_140 Hb_000023_140 Hb_071736_010--Hb_000023_140 Hb_071736_010--Hb_002616_050 Hb_001855_010 Hb_001855_010 Hb_071736_010--Hb_001855_010 Hb_004072_020--Hb_002616_050 Hb_004072_020--Hb_024714_100 Hb_001998_230 Hb_001998_230 Hb_004072_020--Hb_001998_230 Hb_000363_500 Hb_000363_500 Hb_004072_020--Hb_000363_500 Hb_002112_040 Hb_002112_040 Hb_004072_020--Hb_002112_040 Hb_005862_010 Hb_005862_010 Hb_004072_020--Hb_005862_010 Hb_004055_140--Hb_002616_050 Hb_028872_140 Hb_028872_140 Hb_004055_140--Hb_028872_140 Hb_033642_010 Hb_033642_010 Hb_004055_140--Hb_033642_010 Hb_005117_010 Hb_005117_010 Hb_004055_140--Hb_005117_010 Hb_001454_140 Hb_001454_140 Hb_004055_140--Hb_001454_140 Hb_002616_050--Hb_000363_500 Hb_002616_050--Hb_000023_140 Hb_005063_040 Hb_005063_040 Hb_002616_050--Hb_005063_040 Hb_003001_120 Hb_003001_120 Hb_002616_050--Hb_003001_120 Hb_000889_020 Hb_000889_020 Hb_002616_050--Hb_000889_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.8273 13.1366 16.5386 64.0503 43.8364 163.884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
89.8604 64.5453 76.8821 49.0126 40.9078

CAGE analysis