Hb_001124_090

Information

Type -
Description -
Location Contig1124: 144304-145915
Sequence    

Annotation

kegg
ID rcu:RCOM_0679650
description acyl carrier protein, putative (EC:1.3.1.74)
nr
ID XP_002516860.1
description acyl carrier protein, putative [Ricinus communis]
swissprot
ID P32887
description Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3 PE=2 SV=1
trembl
ID B9RSZ1
description Acyl carrier protein OS=Ricinus communis GN=RCOM_0679650 PE=3 SV=1
Gene Ontology
ID GO:0016491
description acyl carrier protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03798: 142993-146826 , PASA_asmbl_03800: 143117-146889
cDNA
(Sanger)
(ID:Location)		 008_E24.ab1: 143133-146830 , 015_J22.ab1: 143117-146889 , 018_D19.ab1: 145242-146821 , 022_B06.ab1: 143154-146718 , 030_F05.ab1: 143117-146826 , 041_L18.ab1: 143125-146826 , 043_E14.ab1: 143119-146825 , 043_O17.ab1: 143113-146722 , 044_D04.ab1: 143119-146825 , 044_N16.ab1: 143097-146826 , 048_L08.ab1: 143005-146722 , 050_G15.ab1: 143113-146722 , 050_I22.ab1: 143155-146826 , 050_N14.ab1: 143199-146826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_090 0.0 - - acyl carrier protein, putative [Ricinus communis]
2 Hb_001318_250 0.0555668259 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
3 Hb_000982_090 0.075829357 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
4 Hb_000934_250 0.0796287443 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
5 Hb_006059_050 0.0808089506 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
6 Hb_000317_390 0.0813727523 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
7 Hb_002601_110 0.0878373593 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
8 Hb_001016_030 0.0911757329 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
9 Hb_004055_070 0.0912557514 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
10 Hb_001047_240 0.0912830193 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
11 Hb_150651_040 0.0915023211 - - PREDICTED: random slug protein 5-like [Jatropha curcas]
12 Hb_002374_570 0.0940415809 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
13 Hb_152784_010 0.0949923858 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
14 Hb_172426_040 0.097215709 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
15 Hb_055062_020 0.0988411614 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
16 Hb_005245_080 0.0993570839 - - PREDICTED: uncharacterized protein LOC105643645 isoform X2 [Jatropha curcas]
17 Hb_000102_020 0.099992974 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
18 Hb_001814_070 0.1000762997 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
19 Hb_001140_370 0.100563784 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
20 Hb_000045_310 0.1008627392 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001124_090 Hb_001124_090 Hb_001318_250 Hb_001318_250 Hb_001124_090--Hb_001318_250 Hb_000982_090 Hb_000982_090 Hb_001124_090--Hb_000982_090 Hb_000934_250 Hb_000934_250 Hb_001124_090--Hb_000934_250 Hb_006059_050 Hb_006059_050 Hb_001124_090--Hb_006059_050 Hb_000317_390 Hb_000317_390 Hb_001124_090--Hb_000317_390 Hb_002601_110 Hb_002601_110 Hb_001124_090--Hb_002601_110 Hb_001318_250--Hb_000934_250 Hb_152784_010 Hb_152784_010 Hb_001318_250--Hb_152784_010 Hb_001318_250--Hb_000317_390 Hb_000103_320 Hb_000103_320 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_172426_040 Hb_172426_040 Hb_000982_090--Hb_172426_040 Hb_001140_370 Hb_001140_370 Hb_000982_090--Hb_001140_370 Hb_000982_090--Hb_006059_050 Hb_000982_090--Hb_001016_030 Hb_009051_030 Hb_009051_030 Hb_000982_090--Hb_009051_030 Hb_003126_090 Hb_003126_090 Hb_000934_250--Hb_003126_090 Hb_003581_150 Hb_003581_150 Hb_000934_250--Hb_003581_150 Hb_065525_020 Hb_065525_020 Hb_000934_250--Hb_065525_020 Hb_000934_250--Hb_152784_010 Hb_010042_010 Hb_010042_010 Hb_000934_250--Hb_010042_010 Hb_003151_040 Hb_003151_040 Hb_006059_050--Hb_003151_040 Hb_008013_050 Hb_008013_050 Hb_006059_050--Hb_008013_050 Hb_006059_050--Hb_172426_040 Hb_000373_070 Hb_000373_070 Hb_006059_050--Hb_000373_070 Hb_005846_040 Hb_005846_040 Hb_006059_050--Hb_005846_040 Hb_000152_500 Hb_000152_500 Hb_006059_050--Hb_000152_500 Hb_000317_390--Hb_152784_010 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_004108_070 Hb_004108_070 Hb_000317_390--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000317_390--Hb_006693_020 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_002601_110--Hb_006059_050 Hb_000111_380 Hb_000111_380 Hb_002601_110--Hb_000111_380 Hb_002601_110--Hb_004108_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.20089 2.90297 9.17702 9.29671 4.86493 9.1418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7253 13.7349 8.17351 5.58145 4.2994

CAGE analysis