Hb_001124_100

Information

Type -
Description -
Location Contig1124: 148658-152853
Sequence    

Annotation

kegg
ID rcu:RCOM_0679660
description vesicle-associated membrane protein, putative
nr
ID XP_012069416.1
description PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
swissprot
ID B9DHD7
description Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1
trembl
ID A0A067L7F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02027 PE=4 SV=1
Gene Ontology
ID GO:0005789
description vesicle-associated protein 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03802: 148960-150333 , PASA_asmbl_03803: 150340-151198 , PASA_asmbl_03804: 151448-152940
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_100 0.0 - - PREDICTED: vesicle-associated protein 2-2-like isoform X1 [Jatropha curcas]
2 Hb_006154_020 0.1189044189 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
3 Hb_113818_010 0.1515036448 - - Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis]
4 Hb_008699_030 0.1536398601 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
5 Hb_000310_100 0.1550829072 - - conserved hypothetical protein [Ricinus communis]
6 Hb_027073_010 0.1612353035 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
7 Hb_002804_040 0.1669051642 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
8 Hb_012244_010 0.1695636875 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
9 Hb_000946_110 0.1695929071 - - GTP cyclohydrolase I, putative [Ricinus communis]
10 Hb_001842_010 0.1704656715 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_001102_020 0.1718577927 - - solanesyl diphosphate synthase [Hevea brasiliensis]
12 Hb_003994_030 0.1746379503 - - PREDICTED: organic cation/carnitine transporter 7 [Jatropha curcas]
13 Hb_003207_020 0.174886892 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
14 Hb_000240_030 0.1773734075 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011249_020 0.1784127504 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
16 Hb_011671_080 0.1785668245 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
17 Hb_004116_020 0.1819101819 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
18 Hb_003453_050 0.1822149919 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
19 Hb_015675_030 0.1834601151 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
20 Hb_003071_070 0.1835528267 - - sucrose synthase 3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_001124_100 Hb_001124_100 Hb_006154_020 Hb_006154_020 Hb_001124_100--Hb_006154_020 Hb_113818_010 Hb_113818_010 Hb_001124_100--Hb_113818_010 Hb_008699_030 Hb_008699_030 Hb_001124_100--Hb_008699_030 Hb_000310_100 Hb_000310_100 Hb_001124_100--Hb_000310_100 Hb_027073_010 Hb_027073_010 Hb_001124_100--Hb_027073_010 Hb_002804_040 Hb_002804_040 Hb_001124_100--Hb_002804_040 Hb_006154_020--Hb_008699_030 Hb_183086_050 Hb_183086_050 Hb_006154_020--Hb_183086_050 Hb_006154_020--Hb_113818_010 Hb_003687_250 Hb_003687_250 Hb_006154_020--Hb_003687_250 Hb_008053_050 Hb_008053_050 Hb_006154_020--Hb_008053_050 Hb_000189_480 Hb_000189_480 Hb_113818_010--Hb_000189_480 Hb_015934_120 Hb_015934_120 Hb_113818_010--Hb_015934_120 Hb_001504_030 Hb_001504_030 Hb_113818_010--Hb_001504_030 Hb_002289_060 Hb_002289_060 Hb_113818_010--Hb_002289_060 Hb_000244_180 Hb_000244_180 Hb_113818_010--Hb_000244_180 Hb_009661_030 Hb_009661_030 Hb_113818_010--Hb_009661_030 Hb_015675_030 Hb_015675_030 Hb_008699_030--Hb_015675_030 Hb_000240_030 Hb_000240_030 Hb_008699_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_008699_030--Hb_001195_070 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_011861_100 Hb_011861_100 Hb_000310_100--Hb_011861_100 Hb_025466_010 Hb_025466_010 Hb_000310_100--Hb_025466_010 Hb_001153_120 Hb_001153_120 Hb_000310_100--Hb_001153_120 Hb_012244_010 Hb_012244_010 Hb_000310_100--Hb_012244_010 Hb_106552_040 Hb_106552_040 Hb_000310_100--Hb_106552_040 Hb_000310_100--Hb_027073_010 Hb_027073_010--Hb_003207_020 Hb_004007_110 Hb_004007_110 Hb_027073_010--Hb_004007_110 Hb_021409_080 Hb_021409_080 Hb_027073_010--Hb_021409_080 Hb_004158_020 Hb_004158_020 Hb_027073_010--Hb_004158_020 Hb_003994_030 Hb_003994_030 Hb_027073_010--Hb_003994_030 Hb_028049_010 Hb_028049_010 Hb_027073_010--Hb_028049_010 Hb_000297_120 Hb_000297_120 Hb_002804_040--Hb_000297_120 Hb_004046_030 Hb_004046_030 Hb_002804_040--Hb_004046_030 Hb_000025_190 Hb_000025_190 Hb_002804_040--Hb_000025_190 Hb_001842_010 Hb_001842_010 Hb_002804_040--Hb_001842_010 Hb_002804_040--Hb_000946_110 Hb_003206_110 Hb_003206_110 Hb_002804_040--Hb_003206_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.7269 1.23765 4.5703 16.9473 0.807128 2.76615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.69189 3.94926 7.43941 5.68173 13.6078

CAGE analysis