Hb_001124_110

Information

Type -
Description -
Location Contig1124: 153789-159133
Sequence    

Annotation

kegg
ID rcu:RCOM_0679670
description sodium/hydrogen exchanger, putative
nr
ID XP_012069415.1
description PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID A0A061EPW3
description Sodium/hydrogen exchanger OS=Theobroma cacao GN=TCM_021126 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03806: 154138-154851 , PASA_asmbl_03807: 154987-157130 , PASA_asmbl_03808: 158166-158600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_110 0.0 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
2 Hb_118507_010 0.1360355269 - - hypothetical protein VITISV_019292 [Vitis vinifera]
3 Hb_088163_010 0.1525897096 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
4 Hb_135757_010 0.155045704 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
5 Hb_029695_050 0.1550527634 - - PREDICTED: fasciclin-like arabinogalactan protein 1 [Jatropha curcas]
6 Hb_000077_290 0.159376614 - - conserved hypothetical protein [Ricinus communis]
7 Hb_066514_010 0.1615665014 - - hypothetical protein RCOM_0204720 [Ricinus communis]
8 Hb_000008_190 0.1720361988 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
9 Hb_012180_010 0.172114325 - - PREDICTED: (S)-ureidoglycine aminohydrolase [Jatropha curcas]
10 Hb_165402_010 0.175179037 - - PREDICTED: cullin-1 isoform X3 [Nicotiana sylvestris]
11 Hb_000029_440 0.1774179699 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit isoform X2 [Vitis vinifera]
12 Hb_011930_150 0.1786198419 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
13 Hb_001021_010 0.1788599057 - - PREDICTED: bifunctional protein FolD 2 [Jatropha curcas]
14 Hb_002900_100 0.1802673013 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
15 Hb_000720_080 0.1807400556 - - PREDICTED: bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1 [Jatropha curcas]
16 Hb_001195_410 0.1813680834 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]
17 Hb_004525_040 0.1815240041 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
18 Hb_007286_020 0.1823340029 - - hypothetical protein L484_010675 [Morus notabilis]
19 Hb_000230_180 0.1825448562 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
20 Hb_002192_030 0.1826697447 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001124_110 Hb_001124_110 Hb_118507_010 Hb_118507_010 Hb_001124_110--Hb_118507_010 Hb_088163_010 Hb_088163_010 Hb_001124_110--Hb_088163_010 Hb_135757_010 Hb_135757_010 Hb_001124_110--Hb_135757_010 Hb_029695_050 Hb_029695_050 Hb_001124_110--Hb_029695_050 Hb_000077_290 Hb_000077_290 Hb_001124_110--Hb_000077_290 Hb_066514_010 Hb_066514_010 Hb_001124_110--Hb_066514_010 Hb_001195_410 Hb_001195_410 Hb_118507_010--Hb_001195_410 Hb_000008_190 Hb_000008_190 Hb_118507_010--Hb_000008_190 Hb_005539_310 Hb_005539_310 Hb_118507_010--Hb_005539_310 Hb_004480_020 Hb_004480_020 Hb_118507_010--Hb_004480_020 Hb_005535_080 Hb_005535_080 Hb_118507_010--Hb_005535_080 Hb_075764_010 Hb_075764_010 Hb_088163_010--Hb_075764_010 Hb_001767_130 Hb_001767_130 Hb_088163_010--Hb_001767_130 Hb_000230_180 Hb_000230_180 Hb_088163_010--Hb_000230_180 Hb_099878_050 Hb_099878_050 Hb_088163_010--Hb_099878_050 Hb_090158_010 Hb_090158_010 Hb_088163_010--Hb_090158_010 Hb_165402_010 Hb_165402_010 Hb_088163_010--Hb_165402_010 Hb_000679_100 Hb_000679_100 Hb_135757_010--Hb_000679_100 Hb_001051_070 Hb_001051_070 Hb_135757_010--Hb_001051_070 Hb_135757_010--Hb_029695_050 Hb_011930_150 Hb_011930_150 Hb_135757_010--Hb_011930_150 Hb_001159_030 Hb_001159_030 Hb_135757_010--Hb_001159_030 Hb_030736_060 Hb_030736_060 Hb_135757_010--Hb_030736_060 Hb_000818_100 Hb_000818_100 Hb_029695_050--Hb_000818_100 Hb_029695_050--Hb_011930_150 Hb_029695_050--Hb_030736_060 Hb_000371_090 Hb_000371_090 Hb_029695_050--Hb_000371_090 Hb_007786_030 Hb_007786_030 Hb_029695_050--Hb_007786_030 Hb_005170_010 Hb_005170_010 Hb_000077_290--Hb_005170_010 Hb_000077_290--Hb_000230_180 Hb_004525_040 Hb_004525_040 Hb_000077_290--Hb_004525_040 Hb_012194_060 Hb_012194_060 Hb_000077_290--Hb_012194_060 Hb_000035_330 Hb_000035_330 Hb_000077_290--Hb_000035_330 Hb_000889_100 Hb_000889_100 Hb_000077_290--Hb_000889_100 Hb_002900_100 Hb_002900_100 Hb_066514_010--Hb_002900_100 Hb_011918_010 Hb_011918_010 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_002490_030 Hb_002490_030 Hb_066514_010--Hb_002490_030 Hb_066514_010--Hb_118507_010 Hb_000302_100 Hb_000302_100 Hb_066514_010--Hb_000302_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.81365 5.60285 7.2636 31.2091 6.46328 6.35064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83842 2.43233 3.37643 12.0787 2.14162

CAGE analysis