Hb_001124_160

Information

Type -
Description -
Location Contig1124: 186185-190860
Sequence    

Annotation

kegg
ID pmum:103322924
description probable serine/threonine-protein kinase At1g54610
nr
ID XP_012069405.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067L7E9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02022 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03817: 186336-190816
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_160 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_000020_190 0.0650237929 - - hypothetical protein RCOM_0452240 [Ricinus communis]
3 Hb_004055_030 0.0683777725 - - casein kinase, putative [Ricinus communis]
4 Hb_062135_030 0.0762529974 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
5 Hb_000166_110 0.0777687872 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
6 Hb_002374_050 0.0793108349 - - PREDICTED: auxilin-related protein 1 [Jatropha curcas]
7 Hb_004310_130 0.0799780469 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
8 Hb_009467_060 0.0809587543 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
9 Hb_000630_050 0.0846259877 - - conserved hypothetical protein [Ricinus communis]
10 Hb_023480_010 0.0869584985 - - cellular nucleic acid binding protein, putative [Ricinus communis]
11 Hb_106724_020 0.0881047215 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]
12 Hb_002728_070 0.0883409871 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
13 Hb_000094_300 0.089085643 - - hypothetical protein POPTR_0002s26360g [Populus trichocarpa]
14 Hb_006922_100 0.0914581364 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
15 Hb_002054_040 0.0921055707 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
16 Hb_000862_030 0.0923342771 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]
17 Hb_000638_120 0.0924578003 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
18 Hb_001141_020 0.0931678456 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
19 Hb_001369_180 0.0948246352 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]
20 Hb_000521_080 0.095597452 - - Zinc finger BED domain-containing 4 [Gossypium arboreum]

Gene co-expression network

sample Hb_001124_160 Hb_001124_160 Hb_000020_190 Hb_000020_190 Hb_001124_160--Hb_000020_190 Hb_004055_030 Hb_004055_030 Hb_001124_160--Hb_004055_030 Hb_062135_030 Hb_062135_030 Hb_001124_160--Hb_062135_030 Hb_000166_110 Hb_000166_110 Hb_001124_160--Hb_000166_110 Hb_002374_050 Hb_002374_050 Hb_001124_160--Hb_002374_050 Hb_004310_130 Hb_004310_130 Hb_001124_160--Hb_004310_130 Hb_006922_100 Hb_006922_100 Hb_000020_190--Hb_006922_100 Hb_007075_040 Hb_007075_040 Hb_000020_190--Hb_007075_040 Hb_005539_220 Hb_005539_220 Hb_000020_190--Hb_005539_220 Hb_000630_050 Hb_000630_050 Hb_000020_190--Hb_000630_050 Hb_000915_020 Hb_000915_020 Hb_000020_190--Hb_000915_020 Hb_004055_030--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_004055_030--Hb_007441_120 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_000445_420 Hb_000445_420 Hb_004055_030--Hb_000445_420 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020 Hb_001141_020 Hb_001141_020 Hb_062135_030--Hb_001141_020 Hb_062135_030--Hb_000020_190 Hb_009467_060 Hb_009467_060 Hb_062135_030--Hb_009467_060 Hb_002496_010 Hb_002496_010 Hb_062135_030--Hb_002496_010 Hb_001198_100 Hb_001198_100 Hb_062135_030--Hb_001198_100 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_006114_030 Hb_006114_030 Hb_002374_050--Hb_006114_030 Hb_002374_050--Hb_002054_040 Hb_000260_220 Hb_000260_220 Hb_002374_050--Hb_000260_220 Hb_004689_050 Hb_004689_050 Hb_002374_050--Hb_004689_050 Hb_100215_010 Hb_100215_010 Hb_002374_050--Hb_100215_010 Hb_007218_080 Hb_007218_080 Hb_004310_130--Hb_007218_080 Hb_150360_030 Hb_150360_030 Hb_004310_130--Hb_150360_030 Hb_001369_180 Hb_001369_180 Hb_004310_130--Hb_001369_180 Hb_000086_380 Hb_000086_380 Hb_004310_130--Hb_000086_380 Hb_001635_170 Hb_001635_170 Hb_004310_130--Hb_001635_170 Hb_000059_330 Hb_000059_330 Hb_004310_130--Hb_000059_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4715 10.4743 12.365 14.8604 15.2885 28.3885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6483 12.2293 16.5113 15.319 13.0571

CAGE analysis