Hb_001124_170

Information

Type -
Description -
Location Contig1124: 192618-200319
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID ADB85429.1
description putative retrotransposon protein [Phyllostachys edulis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID D3IVT9
description Putative retrotransposon protein OS=Phyllostachys edulis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_170 0.0 - - putative retrotransposon protein [Phyllostachys edulis]
2 Hb_002495_050 0.0024726215 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
3 Hb_006933_010 0.0892301693 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_154997_010 0.0962865563 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
5 Hb_021374_020 0.0974635473 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
6 Hb_004124_010 0.1165755556 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_170973_010 0.1501271177 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
8 Hb_009268_030 0.1501916823 - - ribosomal protein S7 [Piper cenocladum]
9 Hb_097433_030 0.1785146219 - - hypothetical protein CISIN_1g0017192mg, partial [Citrus sinensis]
10 Hb_143004_010 0.1804553032 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
11 Hb_002869_070 0.1944910914 - - -
12 Hb_171685_030 0.1978759189 - - URF-1 [Citrullus lanatus]
13 Hb_159938_010 0.1988818567 - - phosphoprotein phosphatase, putative [Ricinus communis]
14 Hb_104735_010 0.2009376198 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
15 Hb_141425_010 0.2018008366 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
16 Hb_000987_110 0.2032460047 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
17 Hb_123396_010 0.2070730041 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
18 Hb_027357_010 0.2221768885 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_102602_030 0.2226276532 - - hypothetical protein (mitochondrion) [Vicia faba]
20 Hb_171685_040 0.2259978577 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_001124_170 Hb_001124_170 Hb_002495_050 Hb_002495_050 Hb_001124_170--Hb_002495_050 Hb_006933_010 Hb_006933_010 Hb_001124_170--Hb_006933_010 Hb_154997_010 Hb_154997_010 Hb_001124_170--Hb_154997_010 Hb_021374_020 Hb_021374_020 Hb_001124_170--Hb_021374_020 Hb_004124_010 Hb_004124_010 Hb_001124_170--Hb_004124_010 Hb_170973_010 Hb_170973_010 Hb_001124_170--Hb_170973_010 Hb_002495_050--Hb_006933_010 Hb_002495_050--Hb_154997_010 Hb_002495_050--Hb_021374_020 Hb_002495_050--Hb_004124_010 Hb_002495_050--Hb_170973_010 Hb_006933_010--Hb_004124_010 Hb_006933_010--Hb_154997_010 Hb_002869_070 Hb_002869_070 Hb_006933_010--Hb_002869_070 Hb_006933_010--Hb_170973_010 Hb_154997_010--Hb_002869_070 Hb_154997_010--Hb_004124_010 Hb_159938_010 Hb_159938_010 Hb_154997_010--Hb_159938_010 Hb_097433_030 Hb_097433_030 Hb_021374_020--Hb_097433_030 Hb_143004_010 Hb_143004_010 Hb_021374_020--Hb_143004_010 Hb_104735_010 Hb_104735_010 Hb_021374_020--Hb_104735_010 Hb_013420_020 Hb_013420_020 Hb_021374_020--Hb_013420_020 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_170973_010--Hb_009268_030 Hb_170973_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_170973_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_170973_010--Hb_123396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0190091 0.00393036 0.106031

CAGE analysis