Hb_001124_210

Information

Type -
Description -
Location Contig1124: 209948-211976
Sequence    

Annotation

kegg
ID rcu:RCOM_0679750
description hypothetical protein
nr
ID XP_002516870.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RT01
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0679750 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03822: 210033-211880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_210 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003847_080 0.0598203719 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
3 Hb_141131_010 0.0624409993 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
4 Hb_002078_150 0.0717579905 - - protein with unknown function [Ricinus communis]
5 Hb_158092_070 0.0743836899 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
6 Hb_123475_010 0.0750441349 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
7 Hb_000363_500 0.0763933922 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
8 Hb_000808_040 0.0807327132 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
9 Hb_001454_140 0.0812039235 - - protein arginine n-methyltransferase, putative [Ricinus communis]
10 Hb_003392_040 0.0815366272 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
11 Hb_004128_190 0.0822677871 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
12 Hb_159558_030 0.0827063169 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
13 Hb_002217_310 0.0836745921 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
14 Hb_185830_020 0.084510543 - - ABC transporter family protein [Hevea brasiliensis]
15 Hb_001246_100 0.0847160085 - - Ras-related small GTP-binding family protein [Theobroma cacao]
16 Hb_000620_080 0.0872903107 - - hypothetical protein F775_32679 [Aegilops tauschii]
17 Hb_000175_070 0.0872907616 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
18 Hb_012305_050 0.0873421985 - - unnamed protein product [Coffea canephora]
19 Hb_000169_010 0.0882953359 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
20 Hb_004374_200 0.0893249758 - - putative GMP synthase [Oxybasis rubra]

Gene co-expression network

sample Hb_001124_210 Hb_001124_210 Hb_003847_080 Hb_003847_080 Hb_001124_210--Hb_003847_080 Hb_141131_010 Hb_141131_010 Hb_001124_210--Hb_141131_010 Hb_002078_150 Hb_002078_150 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500 Hb_012305_050 Hb_012305_050 Hb_003847_080--Hb_012305_050 Hb_004128_190 Hb_004128_190 Hb_003847_080--Hb_004128_190 Hb_185830_020 Hb_185830_020 Hb_003847_080--Hb_185830_020 Hb_003847_080--Hb_002078_150 Hb_003847_080--Hb_000363_500 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_002078_150--Hb_004128_190 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_000398_180 Hb_000398_180 Hb_002078_150--Hb_000398_180 Hb_001377_290 Hb_001377_290 Hb_002078_150--Hb_001377_290 Hb_002078_150--Hb_004545_060 Hb_133271_020 Hb_133271_020 Hb_158092_070--Hb_133271_020 Hb_003052_100 Hb_003052_100 Hb_158092_070--Hb_003052_100 Hb_004221_010 Hb_004221_010 Hb_158092_070--Hb_004221_010 Hb_003392_040 Hb_003392_040 Hb_158092_070--Hb_003392_040 Hb_001030_120 Hb_001030_120 Hb_158092_070--Hb_001030_120 Hb_000975_290 Hb_000975_290 Hb_158092_070--Hb_000975_290 Hb_061908_010 Hb_061908_010 Hb_123475_010--Hb_061908_010 Hb_000169_010 Hb_000169_010 Hb_123475_010--Hb_000169_010 Hb_123475_010--Hb_185830_020 Hb_004223_090 Hb_004223_090 Hb_123475_010--Hb_004223_090 Hb_000956_030 Hb_000956_030 Hb_123475_010--Hb_000956_030 Hb_002616_050 Hb_002616_050 Hb_000363_500--Hb_002616_050 Hb_000363_500--Hb_002078_150 Hb_000363_500--Hb_004128_190 Hb_000465_430 Hb_000465_430 Hb_000363_500--Hb_000465_430 Hb_005063_040 Hb_005063_040 Hb_000363_500--Hb_005063_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.181 5.07158 2.56534 7.69701 12.9204 19.5469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5457 12.7836 9.63308 5.7725 2.18402

CAGE analysis