Hb_001124_220

Information

Type -
Description -
Location Contig1124: 212590-215656
Sequence    

Annotation

kegg
ID tcc:TCM_021138
description DsRNA-binding protein 5, putative isoform 1
nr
ID XP_007035485.1
description DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
swissprot
ID Q0DKP4
description Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1
trembl
ID A0A061EPY3
description DsRNA-binding protein 5, putative isoform 1 OS=Theobroma cacao GN=TCM_021138 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001124_220 0.0 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
2 Hb_162547_010 0.168137234 - - -
3 Hb_003680_190 0.2298394967 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
4 Hb_002194_090 0.2373889035 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000792_090 0.2455264381 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
6 Hb_000384_110 0.2468254048 - - conserved hypothetical protein [Ricinus communis]
7 Hb_126757_010 0.2473309835 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_181398_010 0.2526180589 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_001554_010 0.2543604563 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
10 Hb_023344_070 0.2600400189 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
11 Hb_000066_090 0.2607022175 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
12 Hb_002272_280 0.2610780684 - - phosphoglycerate mutase, putative [Ricinus communis]
13 Hb_001208_010 0.2640349983 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF010-like [Jatropha curcas]
14 Hb_009193_030 0.2642912663 - - hypothetical protein POPTR_0010s16620g [Populus trichocarpa]
15 Hb_003470_090 0.2653494498 - - PREDICTED: pumilio homolog 12 [Jatropha curcas]
16 Hb_007304_040 0.2656159297 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
17 Hb_003925_020 0.2701835553 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
18 Hb_054127_060 0.2724098829 - - hypothetical protein POPTR_0004s09330g [Populus trichocarpa]
19 Hb_000805_290 0.2726372471 - - PREDICTED: cytochrome P450 710A1-like [Jatropha curcas]
20 Hb_000106_140 0.2733782656 - - -

Gene co-expression network

sample Hb_001124_220 Hb_001124_220 Hb_162547_010 Hb_162547_010 Hb_001124_220--Hb_162547_010 Hb_003680_190 Hb_003680_190 Hb_001124_220--Hb_003680_190 Hb_002194_090 Hb_002194_090 Hb_001124_220--Hb_002194_090 Hb_000792_090 Hb_000792_090 Hb_001124_220--Hb_000792_090 Hb_000384_110 Hb_000384_110 Hb_001124_220--Hb_000384_110 Hb_126757_010 Hb_126757_010 Hb_001124_220--Hb_126757_010 Hb_004117_120 Hb_004117_120 Hb_162547_010--Hb_004117_120 Hb_162547_010--Hb_126757_010 Hb_003925_020 Hb_003925_020 Hb_162547_010--Hb_003925_020 Hb_009646_040 Hb_009646_040 Hb_162547_010--Hb_009646_040 Hb_002272_280 Hb_002272_280 Hb_162547_010--Hb_002272_280 Hb_000690_050 Hb_000690_050 Hb_003680_190--Hb_000690_050 Hb_000629_120 Hb_000629_120 Hb_003680_190--Hb_000629_120 Hb_000363_160 Hb_000363_160 Hb_003680_190--Hb_000363_160 Hb_000359_010 Hb_000359_010 Hb_003680_190--Hb_000359_010 Hb_000898_050 Hb_000898_050 Hb_003680_190--Hb_000898_050 Hb_000297_040 Hb_000297_040 Hb_003680_190--Hb_000297_040 Hb_000069_170 Hb_000069_170 Hb_002194_090--Hb_000069_170 Hb_000130_050 Hb_000130_050 Hb_002194_090--Hb_000130_050 Hb_000805_290 Hb_000805_290 Hb_002194_090--Hb_000805_290 Hb_001662_060 Hb_001662_060 Hb_002194_090--Hb_001662_060 Hb_002194_090--Hb_003680_190 Hb_002194_090--Hb_002272_280 Hb_000162_260 Hb_000162_260 Hb_000792_090--Hb_000162_260 Hb_005695_120 Hb_005695_120 Hb_000792_090--Hb_005695_120 Hb_003470_090 Hb_003470_090 Hb_000792_090--Hb_003470_090 Hb_000125_080 Hb_000125_080 Hb_000792_090--Hb_000125_080 Hb_001699_100 Hb_001699_100 Hb_000792_090--Hb_001699_100 Hb_000792_090--Hb_000130_050 Hb_003938_160 Hb_003938_160 Hb_000384_110--Hb_003938_160 Hb_005188_030 Hb_005188_030 Hb_000384_110--Hb_005188_030 Hb_000931_020 Hb_000931_020 Hb_000384_110--Hb_000931_020 Hb_018118_030 Hb_018118_030 Hb_000384_110--Hb_018118_030 Hb_000984_310 Hb_000984_310 Hb_000384_110--Hb_000984_310 Hb_000622_340 Hb_000622_340 Hb_000384_110--Hb_000622_340 Hb_000465_270 Hb_000465_270 Hb_126757_010--Hb_000465_270 Hb_004627_030 Hb_004627_030 Hb_126757_010--Hb_004627_030 Hb_007926_050 Hb_007926_050 Hb_126757_010--Hb_007926_050 Hb_001486_190 Hb_001486_190 Hb_126757_010--Hb_001486_190 Hb_000402_130 Hb_000402_130 Hb_126757_010--Hb_000402_130 Hb_075247_010 Hb_075247_010 Hb_126757_010--Hb_075247_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.360745 0.922952 0.25943 5.41076 2.57601 1.0396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54302 1.15531 5.66714 2.01949 0.123811

CAGE analysis