Hb_001125_030

Information

Type -
Description -
Location Contig1125: 70073-71081
Sequence    

Annotation

kegg
ID rcu:RCOM_0072660
description hypothetical protein
nr
ID XP_002534512.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID B9T8E3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0072660 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at3g07870-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001125_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_059126_010 0.0712903017 - - -
3 Hb_029866_010 0.0894304029 - - -
4 Hb_013983_010 0.0995986433 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
5 Hb_033225_020 0.1192085116 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000345_480 0.1517648602 - - cyclin-dependent protein kinase, putative [Ricinus communis]
7 Hb_000153_040 0.1768853831 - - -
8 Hb_002983_100 0.1822695982 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
9 Hb_003494_260 0.1899759301 - - -
10 Hb_000008_050 0.1924163796 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
11 Hb_000362_240 0.2093255124 - - conserved hypothetical protein [Ricinus communis]
12 Hb_081636_010 0.2261319029 - - -
13 Hb_152587_010 0.2315917356 - - -
14 Hb_114868_010 0.2343056683 - - -
15 Hb_005116_020 0.234337568 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Sesamum indicum]
16 Hb_001584_230 0.2365543524 - - invertase/pectin methylesterase inhibitor family protein [Populus trichocarpa]
17 Hb_005892_070 0.239560343 - - Ribosomal L11 methyltransferase [Gossypium arboreum]
18 Hb_001364_020 0.2474553998 - - -
19 Hb_005867_010 0.2486697757 - - -
20 Hb_134732_010 0.2507241389 - - -

Gene co-expression network

sample Hb_001125_030 Hb_001125_030 Hb_059126_010 Hb_059126_010 Hb_001125_030--Hb_059126_010 Hb_029866_010 Hb_029866_010 Hb_001125_030--Hb_029866_010 Hb_013983_010 Hb_013983_010 Hb_001125_030--Hb_013983_010 Hb_033225_020 Hb_033225_020 Hb_001125_030--Hb_033225_020 Hb_000345_480 Hb_000345_480 Hb_001125_030--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_001125_030--Hb_000153_040 Hb_059126_010--Hb_033225_020 Hb_059126_010--Hb_029866_010 Hb_059126_010--Hb_013983_010 Hb_000008_050 Hb_000008_050 Hb_059126_010--Hb_000008_050 Hb_002983_100 Hb_002983_100 Hb_059126_010--Hb_002983_100 Hb_029866_010--Hb_013983_010 Hb_029866_010--Hb_033225_020 Hb_029866_010--Hb_000345_480 Hb_081636_010 Hb_081636_010 Hb_029866_010--Hb_081636_010 Hb_013983_010--Hb_000345_480 Hb_003494_260 Hb_003494_260 Hb_013983_010--Hb_003494_260 Hb_013983_010--Hb_000153_040 Hb_013983_010--Hb_081636_010 Hb_033225_020--Hb_013983_010 Hb_001584_230 Hb_001584_230 Hb_033225_020--Hb_001584_230 Hb_033225_020--Hb_002983_100 Hb_000345_480--Hb_003494_260 Hb_000345_480--Hb_000153_040 Hb_075570_010 Hb_075570_010 Hb_000345_480--Hb_075570_010 Hb_132629_010 Hb_132629_010 Hb_000345_480--Hb_132629_010 Hb_000153_040--Hb_003494_260 Hb_000153_040--Hb_132629_010 Hb_000153_040--Hb_075570_010 Hb_000007_310 Hb_000007_310 Hb_000153_040--Hb_000007_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0916563 0 0 0 0.217815 0.0403854
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis