Hb_001128_060

Information

Type -
Description -
Location Contig1128: 109690-112770
Sequence    

Annotation

kegg
ID rcu:RCOM_0852710
description amino acid permease, putative
nr
ID XP_002517413.1
description amino acid permease, putative [Ricinus communis]
swissprot
ID Q9LFR1
description Protein NRT1/ PTR FAMILY 5.8 OS=Arabidopsis thaliana GN=NPF5.8 PE=2 SV=1
trembl
ID B9RUG8
description Amino acid permease, putative OS=Ricinus communis GN=RCOM_0852710 PE=4 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03868: 109701-112749
cDNA
(Sanger)
(ID:Location)		 013_H10.ab1: 109829-111547

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001128_060 0.0 - - amino acid permease, putative [Ricinus communis]
2 Hb_005167_040 0.1633994587 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
3 Hb_000086_200 0.1650080793 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_002027_220 0.171407192 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
5 Hb_000392_070 0.1745815445 - - catalytic, putative [Ricinus communis]
6 Hb_001696_030 0.1767109257 - - cytochrome P450, putative [Ricinus communis]
7 Hb_000031_030 0.1785038197 - - PREDICTED: plasma membrane ATPase 4 [Jatropha curcas]
8 Hb_026447_030 0.179354868 - - hypothetical protein POPTR_0006s06500g [Populus trichocarpa]
9 Hb_135810_010 0.1806895637 - - PREDICTED: phospholipase A1-IIdelta [Jatropha curcas]
10 Hb_000258_080 0.1815397002 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
11 Hb_000170_250 0.1834466714 - - hypothetical protein F775_29828 [Aegilops tauschii]
12 Hb_116349_160 0.1836829476 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
13 Hb_004218_150 0.1837786765 - - electron transporter, putative [Ricinus communis]
14 Hb_063716_010 0.1905940612 - - phopholipase d alpha, putative [Ricinus communis]
15 Hb_002248_140 0.1915699631 - - acetylglucosaminyltransferase, putative [Ricinus communis]
16 Hb_011282_030 0.1921759516 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
17 Hb_012977_010 0.1953423978 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
18 Hb_002111_060 0.1956989744 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
19 Hb_000012_150 0.1981501952 - - PREDICTED: vacuolar-processing enzyme-like [Jatropha curcas]
20 Hb_001825_010 0.1990630131 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_001128_060 Hb_001128_060 Hb_005167_040 Hb_005167_040 Hb_001128_060--Hb_005167_040 Hb_000086_200 Hb_000086_200 Hb_001128_060--Hb_000086_200 Hb_002027_220 Hb_002027_220 Hb_001128_060--Hb_002027_220 Hb_000392_070 Hb_000392_070 Hb_001128_060--Hb_000392_070 Hb_001696_030 Hb_001696_030 Hb_001128_060--Hb_001696_030 Hb_000031_030 Hb_000031_030 Hb_001128_060--Hb_000031_030 Hb_005167_040--Hb_001696_030 Hb_023988_020 Hb_023988_020 Hb_005167_040--Hb_023988_020 Hb_000258_080 Hb_000258_080 Hb_005167_040--Hb_000258_080 Hb_007766_010 Hb_007766_010 Hb_005167_040--Hb_007766_010 Hb_005167_040--Hb_000031_030 Hb_000082_080 Hb_000082_080 Hb_005167_040--Hb_000082_080 Hb_002111_060 Hb_002111_060 Hb_000086_200--Hb_002111_060 Hb_000197_210 Hb_000197_210 Hb_000086_200--Hb_000197_210 Hb_176152_010 Hb_176152_010 Hb_000086_200--Hb_176152_010 Hb_000025_090 Hb_000025_090 Hb_000086_200--Hb_000025_090 Hb_000236_380 Hb_000236_380 Hb_000086_200--Hb_000236_380 Hb_000123_090 Hb_000123_090 Hb_000086_200--Hb_000123_090 Hb_001268_210 Hb_001268_210 Hb_002027_220--Hb_001268_210 Hb_135810_010 Hb_135810_010 Hb_002027_220--Hb_135810_010 Hb_000120_240 Hb_000120_240 Hb_002027_220--Hb_000120_240 Hb_012977_010 Hb_012977_010 Hb_002027_220--Hb_012977_010 Hb_012390_010 Hb_012390_010 Hb_002027_220--Hb_012390_010 Hb_003654_010 Hb_003654_010 Hb_002027_220--Hb_003654_010 Hb_004218_150 Hb_004218_150 Hb_000392_070--Hb_004218_150 Hb_006400_040 Hb_006400_040 Hb_000392_070--Hb_006400_040 Hb_000204_040 Hb_000204_040 Hb_000392_070--Hb_000204_040 Hb_005306_110 Hb_005306_110 Hb_000392_070--Hb_005306_110 Hb_008725_250 Hb_008725_250 Hb_000392_070--Hb_008725_250 Hb_000943_070 Hb_000943_070 Hb_000392_070--Hb_000943_070 Hb_001696_030--Hb_023988_020 Hb_001696_030--Hb_007766_010 Hb_001205_090 Hb_001205_090 Hb_001696_030--Hb_001205_090 Hb_004659_120 Hb_004659_120 Hb_001696_030--Hb_004659_120 Hb_000376_110 Hb_000376_110 Hb_001696_030--Hb_000376_110 Hb_000364_010 Hb_000364_010 Hb_000031_030--Hb_000364_010 Hb_000031_030--Hb_000204_040 Hb_008511_050 Hb_008511_050 Hb_000031_030--Hb_008511_050 Hb_000236_250 Hb_000236_250 Hb_000031_030--Hb_000236_250 Hb_071736_010 Hb_071736_010 Hb_000031_030--Hb_071736_010 Hb_006487_050 Hb_006487_050 Hb_000031_030--Hb_006487_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.0312 5.97663 1.00495 19.5743 15.705 20.0571
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9557 4.34029 14.1116 1.45972 1.03561

CAGE analysis