Hb_001131_050

Information

Type -
Description -
Location Contig1131: 75072-75537
Sequence    

Annotation

kegg
ID egr:104454722
description uncharacterized LOC104454722
nr
ID KCW81604.1
description hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CTR5
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02968 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03897: 74871-75627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001131_050 0.0 - - hypothetical protein EUGRSUZ_C02968 [Eucalyptus grandis]
2 Hb_005391_050 0.1098050982 - - PREDICTED: uncharacterized protein LOC105643654 [Jatropha curcas]
3 Hb_001976_100 0.1202928985 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
4 Hb_000009_250 0.1251973171 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_000023_180 0.1286319818 - - Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis]
6 Hb_001709_080 0.1326651744 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
7 Hb_000080_100 0.1372800367 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
8 Hb_004930_020 0.1379968169 transcription factor TF Family: MYB PREDICTED: transcriptional activator Myb-like [Jatropha curcas]
9 Hb_011224_150 0.1400126476 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
10 Hb_006916_140 0.1423635842 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
11 Hb_019925_020 0.1430049626 - - electron carrier, putative [Ricinus communis]
12 Hb_001396_130 0.1451445553 - - conserved hypothetical protein [Ricinus communis]
13 Hb_030949_010 0.1482459558 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
14 Hb_000368_040 0.1511574483 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_004625_020 0.1517595563 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
16 Hb_002053_170 0.152399853 - - cytochrome P450, putative [Ricinus communis]
17 Hb_000856_030 0.153081169 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000856_210 0.1536401967 - - nitrate transporter, putative [Ricinus communis]
19 Hb_008948_010 0.155339979 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
20 Hb_002835_070 0.1553991923 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001131_050 Hb_001131_050 Hb_005391_050 Hb_005391_050 Hb_001131_050--Hb_005391_050 Hb_001976_100 Hb_001976_100 Hb_001131_050--Hb_001976_100 Hb_000009_250 Hb_000009_250 Hb_001131_050--Hb_000009_250 Hb_000023_180 Hb_000023_180 Hb_001131_050--Hb_000023_180 Hb_001709_080 Hb_001709_080 Hb_001131_050--Hb_001709_080 Hb_000080_100 Hb_000080_100 Hb_001131_050--Hb_000080_100 Hb_005391_050--Hb_000023_180 Hb_008948_010 Hb_008948_010 Hb_005391_050--Hb_008948_010 Hb_142056_010 Hb_142056_010 Hb_005391_050--Hb_142056_010 Hb_002835_070 Hb_002835_070 Hb_005391_050--Hb_002835_070 Hb_005391_050--Hb_001976_100 Hb_001976_100--Hb_000009_250 Hb_004930_020 Hb_004930_020 Hb_001976_100--Hb_004930_020 Hb_001976_100--Hb_000023_180 Hb_001976_100--Hb_002835_070 Hb_001396_130 Hb_001396_130 Hb_001976_100--Hb_001396_130 Hb_000334_030 Hb_000334_030 Hb_001976_100--Hb_000334_030 Hb_000009_250--Hb_001709_080 Hb_000368_040 Hb_000368_040 Hb_000009_250--Hb_000368_040 Hb_002171_050 Hb_002171_050 Hb_000009_250--Hb_002171_050 Hb_000009_250--Hb_000080_100 Hb_000009_250--Hb_002835_070 Hb_000000_290 Hb_000000_290 Hb_000023_180--Hb_000000_290 Hb_000023_180--Hb_002835_070 Hb_005329_030 Hb_005329_030 Hb_000023_180--Hb_005329_030 Hb_001950_100 Hb_001950_100 Hb_000023_180--Hb_001950_100 Hb_042083_010 Hb_042083_010 Hb_001709_080--Hb_042083_010 Hb_000245_110 Hb_000245_110 Hb_001709_080--Hb_000245_110 Hb_000012_380 Hb_000012_380 Hb_001709_080--Hb_000012_380 Hb_001709_080--Hb_000368_040 Hb_005827_020 Hb_005827_020 Hb_001709_080--Hb_005827_020 Hb_011224_150 Hb_011224_150 Hb_000080_100--Hb_011224_150 Hb_000080_100--Hb_001976_100 Hb_000080_100--Hb_002171_050 Hb_000080_100--Hb_004930_020 Hb_001019_030 Hb_001019_030 Hb_000080_100--Hb_001019_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.81754 0.189849 6.63971 0.114986 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.850322 4.21957

CAGE analysis