Hb_001133_020

Information

Type -
Description -
Location Contig1133: 16774-18947
Sequence    

Annotation

kegg
ID rcu:RCOM_1381010
description hypothetical protein
nr
ID XP_012084643.1
description PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
swissprot
ID Q9P7W4
description F-box/WD repeat-containing protein pof10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof10 PE=1 SV=1
trembl
ID A0A067JTN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20822 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03960: 16805-18903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001133_020 0.0 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
2 Hb_018133_060 0.0830610929 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
3 Hb_011161_040 0.0843905167 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
4 Hb_000086_070 0.0889241745 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
5 Hb_023226_010 0.0896570075 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
6 Hb_000087_020 0.090857761 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
7 Hb_084849_020 0.0924878409 - - ARF GTPase activator, putative [Ricinus communis]
8 Hb_002749_100 0.0943504702 - - PREDICTED: ubiquitin domain-containing protein 1 [Jatropha curcas]
9 Hb_000362_210 0.0951924054 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
10 Hb_000317_340 0.0960229142 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000274_020 0.099306986 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
12 Hb_000444_050 0.1007695019 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
13 Hb_012515_010 0.1014471321 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
14 Hb_005686_110 0.1014507897 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
15 Hb_011794_070 0.1025456702 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
16 Hb_003927_130 0.1033708406 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
17 Hb_000024_080 0.1066092413 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
18 Hb_000200_210 0.1074986701 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001584_070 0.1081151756 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005997_010 0.1091030871 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]

Gene co-expression network

sample Hb_001133_020 Hb_001133_020 Hb_018133_060 Hb_018133_060 Hb_001133_020--Hb_018133_060 Hb_011161_040 Hb_011161_040 Hb_001133_020--Hb_011161_040 Hb_000086_070 Hb_000086_070 Hb_001133_020--Hb_000086_070 Hb_023226_010 Hb_023226_010 Hb_001133_020--Hb_023226_010 Hb_000087_020 Hb_000087_020 Hb_001133_020--Hb_000087_020 Hb_084849_020 Hb_084849_020 Hb_001133_020--Hb_084849_020 Hb_000444_050 Hb_000444_050 Hb_018133_060--Hb_000444_050 Hb_001604_080 Hb_001604_080 Hb_018133_060--Hb_001604_080 Hb_023732_070 Hb_023732_070 Hb_018133_060--Hb_023732_070 Hb_011781_030 Hb_011781_030 Hb_018133_060--Hb_011781_030 Hb_010180_020 Hb_010180_020 Hb_018133_060--Hb_010180_020 Hb_018133_060--Hb_000086_070 Hb_004453_150 Hb_004453_150 Hb_011161_040--Hb_004453_150 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_025193_050 Hb_025193_050 Hb_011161_040--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011161_040--Hb_000152_430 Hb_003927_130 Hb_003927_130 Hb_000086_070--Hb_003927_130 Hb_001829_060 Hb_001829_060 Hb_000086_070--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_000086_070--Hb_001109_020 Hb_000086_070--Hb_000444_050 Hb_000883_050 Hb_000883_050 Hb_000086_070--Hb_000883_050 Hb_001383_060 Hb_001383_060 Hb_000086_070--Hb_001383_060 Hb_000144_090 Hb_000144_090 Hb_023226_010--Hb_000144_090 Hb_023226_010--Hb_011161_040 Hb_008173_120 Hb_008173_120 Hb_023226_010--Hb_008173_120 Hb_000032_540 Hb_000032_540 Hb_023226_010--Hb_000032_540 Hb_000048_050 Hb_000048_050 Hb_023226_010--Hb_000048_050 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_001369_050 Hb_001369_050 Hb_084849_020--Hb_001369_050 Hb_001718_100 Hb_001718_100 Hb_084849_020--Hb_001718_100 Hb_005686_110 Hb_005686_110 Hb_084849_020--Hb_005686_110 Hb_003050_230 Hb_003050_230 Hb_084849_020--Hb_003050_230 Hb_001427_120 Hb_001427_120 Hb_084849_020--Hb_001427_120 Hb_000362_210 Hb_000362_210 Hb_084849_020--Hb_000362_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
118.325 16.5298 24.1626 56.8905 50.8864 154.083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
151.601 205.79 111.835 30.0727 19.3102

CAGE analysis