Hb_001133_100

Information

Type -
Description -
Location Contig1133: 172293-175068
Sequence    

Annotation

kegg
ID pop:POPTR_0012s02660g
description POPTRDRAFT_823225; hypothetical protein
nr
ID XP_012067043.1
description PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
swissprot
ID Q9T095
description Oligopeptide transporter 6 OS=Arabidopsis thaliana GN=OPT6 PE=2 SV=1
trembl
ID A0A067LDI9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03016 PE=4 SV=1
Gene Ontology
ID GO:0055085
description oligopeptide transporter 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03974: 172192-172453 , PASA_asmbl_03975: 172605-173166 , PASA_asmbl_03977: 173899-174237
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001133_100 0.0 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
2 Hb_000442_070 0.1366023916 - - PREDICTED: uncharacterized protein LOC105645538 [Jatropha curcas]
3 Hb_007044_250 0.1372571889 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001405_090 0.143451554 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 5, chloroplastic [Jatropha curcas]
5 Hb_003106_170 0.1465944935 - - Endonuclease III, putative [Ricinus communis]
6 Hb_007694_060 0.1520799831 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
7 Hb_000977_270 0.1527538483 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
8 Hb_134949_010 0.1533513 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
9 Hb_002304_180 0.1579224001 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
10 Hb_001969_100 0.1622626141 - - signal transducer, putative [Ricinus communis]
11 Hb_003494_030 0.1628326457 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
12 Hb_009296_030 0.1636819039 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
13 Hb_002477_020 0.1640824544 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
14 Hb_005563_040 0.1648065517 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
15 Hb_000099_050 0.1663826334 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002071_030 0.1682468687 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
17 Hb_000803_170 0.1706956971 - - PREDICTED: uncharacterized protein LOC105648312 [Jatropha curcas]
18 Hb_027298_020 0.1720169758 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
19 Hb_006620_070 0.1756399369 - - chloroplast 30S ribosomal protein S13 [Hevea brasiliensis]
20 Hb_000667_140 0.1774994468 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001133_100 Hb_001133_100 Hb_000442_070 Hb_000442_070 Hb_001133_100--Hb_000442_070 Hb_007044_250 Hb_007044_250 Hb_001133_100--Hb_007044_250 Hb_001405_090 Hb_001405_090 Hb_001133_100--Hb_001405_090 Hb_003106_170 Hb_003106_170 Hb_001133_100--Hb_003106_170 Hb_007694_060 Hb_007694_060 Hb_001133_100--Hb_007694_060 Hb_000977_270 Hb_000977_270 Hb_001133_100--Hb_000977_270 Hb_010557_010 Hb_010557_010 Hb_000442_070--Hb_010557_010 Hb_005563_040 Hb_005563_040 Hb_000442_070--Hb_005563_040 Hb_011114_020 Hb_011114_020 Hb_000442_070--Hb_011114_020 Hb_002411_100 Hb_002411_100 Hb_000442_070--Hb_002411_100 Hb_006620_070 Hb_006620_070 Hb_000442_070--Hb_006620_070 Hb_003948_020 Hb_003948_020 Hb_000442_070--Hb_003948_020 Hb_007044_250--Hb_000977_270 Hb_007044_250--Hb_003106_170 Hb_001484_080 Hb_001484_080 Hb_007044_250--Hb_001484_080 Hb_003752_060 Hb_003752_060 Hb_007044_250--Hb_003752_060 Hb_002304_180 Hb_002304_180 Hb_007044_250--Hb_002304_180 Hb_036790_120 Hb_036790_120 Hb_007044_250--Hb_036790_120 Hb_001405_090--Hb_006620_070 Hb_004459_060 Hb_004459_060 Hb_001405_090--Hb_004459_060 Hb_001405_090--Hb_000442_070 Hb_001405_090--Hb_007694_060 Hb_001405_090--Hb_011114_020 Hb_000206_170 Hb_000206_170 Hb_001405_090--Hb_000206_170 Hb_003106_170--Hb_000977_270 Hb_003106_170--Hb_001484_080 Hb_000062_520 Hb_000062_520 Hb_003106_170--Hb_000062_520 Hb_003106_170--Hb_002304_180 Hb_000667_140 Hb_000667_140 Hb_003106_170--Hb_000667_140 Hb_007694_060--Hb_004459_060 Hb_000005_130 Hb_000005_130 Hb_007694_060--Hb_000005_130 Hb_007694_060--Hb_006620_070 Hb_005488_160 Hb_005488_160 Hb_007694_060--Hb_005488_160 Hb_023732_050 Hb_023732_050 Hb_007694_060--Hb_023732_050 Hb_000977_270--Hb_036790_120 Hb_000977_270--Hb_001484_080 Hb_000977_270--Hb_002304_180 Hb_000977_270--Hb_003752_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136096 0.302695 4.62658 1.02839 0.341842 0.103601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.941169 1.19751 0.479389 0.181617 10.2871

CAGE analysis