Hb_001135_050

Information

Type -
Description -
Location Contig1135: 50641-55863
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22170g
description POPTRDRAFT_227753; hypothetical protein
nr
ID XP_012073485.1
description PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
swissprot
ID Q94JV5
description Nitrilase-like protein 2 OS=Arabidopsis thaliana GN=NLP2 PE=2 SV=1
trembl
ID B9HTZ5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22170g PE=4 SV=2
Gene Ontology
ID GO:0009536
description nitrilase-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04026: 50710-52246 , PASA_asmbl_04027: 52511-52809 , PASA_asmbl_04028: 55188-55788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_050 0.0 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
2 Hb_001246_090 0.0616504638 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
3 Hb_003392_040 0.0634918302 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
4 Hb_000169_010 0.0641686364 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
5 Hb_007254_040 0.0676294507 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
6 Hb_000638_080 0.0681070038 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
7 Hb_004048_070 0.0725168687 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
8 Hb_000720_120 0.0783115324 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
9 Hb_001221_410 0.0787731379 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
10 Hb_011689_080 0.081305763 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
11 Hb_001604_010 0.0855095431 - - 14-3-3 protein, putative [Ricinus communis]
12 Hb_003540_040 0.0857930761 - - hypothetical protein JCGZ_20979 [Jatropha curcas]
13 Hb_001404_100 0.0862276557 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K [Gossypium raimondii]
14 Hb_003058_130 0.0866258799 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
15 Hb_032717_080 0.087134928 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
16 Hb_000179_170 0.0873290911 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
17 Hb_158092_070 0.0887830089 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
18 Hb_005539_030 0.0890464162 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
19 Hb_004310_030 0.0893081697 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
20 Hb_003732_020 0.0893194647 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_001135_050 Hb_001135_050 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_003392_040 Hb_003392_040 Hb_001135_050--Hb_003392_040 Hb_000169_010 Hb_000169_010 Hb_001135_050--Hb_000169_010 Hb_007254_040 Hb_007254_040 Hb_001135_050--Hb_007254_040 Hb_000638_080 Hb_000638_080 Hb_001135_050--Hb_000638_080 Hb_004048_070 Hb_004048_070 Hb_001135_050--Hb_004048_070 Hb_000494_020 Hb_000494_020 Hb_001246_090--Hb_000494_020 Hb_022250_040 Hb_022250_040 Hb_001246_090--Hb_022250_040 Hb_001246_090--Hb_003392_040 Hb_002105_090 Hb_002105_090 Hb_001246_090--Hb_002105_090 Hb_004324_310 Hb_004324_310 Hb_001246_090--Hb_004324_310 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_003392_040--Hb_000169_010 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_000032_570 Hb_000032_570 Hb_003392_040--Hb_000032_570 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_000720_120 Hb_000720_120 Hb_003392_040--Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_000169_010--Hb_007254_040 Hb_000169_010--Hb_000032_570 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007317_180 Hb_007317_180 Hb_007254_040--Hb_007317_180 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_000638_080--Hb_000720_120 Hb_000638_080--Hb_005539_030 Hb_000638_080--Hb_000169_010 Hb_000638_080--Hb_004048_070 Hb_001221_410 Hb_001221_410 Hb_000638_080--Hb_001221_410 Hb_015746_010 Hb_015746_010 Hb_004048_070--Hb_015746_010 Hb_032717_080 Hb_032717_080 Hb_004048_070--Hb_032717_080 Hb_004048_070--Hb_004970_110 Hb_004048_070--Hb_007254_040 Hb_004048_070--Hb_005539_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6061 5.80354 8.53782 6.80088 17.8825 19.8342
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.4469 18.5047 15.2269 11.1826 3.68178

CAGE analysis