Hb_001135_060

Information

Type -
Description -
Location Contig1135: 60843-67559
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04670g
description POPTRDRAFT_563814; serine/threonine protein phosphatase 2C
nr
ID XP_012073506.1
description PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
swissprot
ID Q9LHJ9
description Probable protein phosphatase 2C 38 OS=Arabidopsis thaliana GN=At3g12620 PE=2 SV=1
trembl
ID A0A067LCK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06643 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 38 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04029: 60857-67591 , PASA_asmbl_04030: 60948-67584 , PASA_asmbl_04031: 60948-65167 , PASA_asmbl_04032: 61197-62574
cDNA
(Sanger)
(ID:Location)		 021_I14.ab1: 60948-62481 , 044_H22.ab1: 61104-64504 , 044_L18.ab1: 61104-62613

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_060 0.0 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
2 Hb_000606_090 0.0638360153 - - Far upstream element-binding protein, putative [Ricinus communis]
3 Hb_033642_030 0.0723780295 - - PREDICTED: G-protein coupled receptor 1 isoform X1 [Jatropha curcas]
4 Hb_000494_040 0.0776181735 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
5 Hb_032050_040 0.0789564873 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
6 Hb_002716_130 0.0807699538 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
7 Hb_003665_060 0.0836083875 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
8 Hb_000212_240 0.0838952594 - - short-chain dehydrogenase, putative [Ricinus communis]
9 Hb_000107_200 0.085937967 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
10 Hb_082821_010 0.0869561469 - - PREDICTED: dephospho-CoA kinase-like [Jatropha curcas]
11 Hb_003030_070 0.0879680044 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
12 Hb_000618_040 0.0885360869 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
13 Hb_008643_210 0.0888847707 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
14 Hb_000594_050 0.0892924115 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
15 Hb_000010_330 0.090350671 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
16 Hb_007904_200 0.0906271958 - - protein binding protein, putative [Ricinus communis]
17 Hb_144598_030 0.0907036889 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
18 Hb_065500_060 0.0907920232 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
19 Hb_103012_010 0.0920662586 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
20 Hb_016172_020 0.0921863779 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_001135_060 Hb_001135_060 Hb_000606_090 Hb_000606_090 Hb_001135_060--Hb_000606_090 Hb_033642_030 Hb_033642_030 Hb_001135_060--Hb_033642_030 Hb_000494_040 Hb_000494_040 Hb_001135_060--Hb_000494_040 Hb_032050_040 Hb_032050_040 Hb_001135_060--Hb_032050_040 Hb_002716_130 Hb_002716_130 Hb_001135_060--Hb_002716_130 Hb_003665_060 Hb_003665_060 Hb_001135_060--Hb_003665_060 Hb_000212_240 Hb_000212_240 Hb_000606_090--Hb_000212_240 Hb_000606_090--Hb_000494_040 Hb_000606_090--Hb_003665_060 Hb_001444_010 Hb_001444_010 Hb_000606_090--Hb_001444_010 Hb_000025_110 Hb_000025_110 Hb_000606_090--Hb_000025_110 Hb_000789_310 Hb_000789_310 Hb_033642_030--Hb_000789_310 Hb_002272_130 Hb_002272_130 Hb_033642_030--Hb_002272_130 Hb_007416_300 Hb_007416_300 Hb_033642_030--Hb_007416_300 Hb_002947_030 Hb_002947_030 Hb_033642_030--Hb_002947_030 Hb_000200_380 Hb_000200_380 Hb_033642_030--Hb_000200_380 Hb_000060_090 Hb_000060_090 Hb_033642_030--Hb_000060_090 Hb_005862_010 Hb_005862_010 Hb_000494_040--Hb_005862_010 Hb_000373_240 Hb_000373_240 Hb_000494_040--Hb_000373_240 Hb_163950_030 Hb_163950_030 Hb_000494_040--Hb_163950_030 Hb_000010_090 Hb_000010_090 Hb_000494_040--Hb_000010_090 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_003010_020 Hb_003010_020 Hb_032050_040--Hb_003010_020 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_002273_120 Hb_002273_120 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_004117_130 Hb_004117_130 Hb_002716_130--Hb_004117_130 Hb_000010_330 Hb_000010_330 Hb_002716_130--Hb_000010_330 Hb_000085_160 Hb_000085_160 Hb_002716_130--Hb_000085_160 Hb_002716_130--Hb_000212_240 Hb_006252_040 Hb_006252_040 Hb_002716_130--Hb_006252_040 Hb_007317_110 Hb_007317_110 Hb_002716_130--Hb_007317_110 Hb_003665_060--Hb_000010_330 Hb_003964_070 Hb_003964_070 Hb_003665_060--Hb_003964_070 Hb_003665_060--Hb_007317_110 Hb_000230_560 Hb_000230_560 Hb_003665_060--Hb_000230_560 Hb_003030_070 Hb_003030_070 Hb_003665_060--Hb_003030_070 Hb_003665_060--Hb_000085_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3203 7.32429 11.4238 12.9999 14.4366 24.2341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8435 11.3288 11.3824 7.98744 9.24619

CAGE analysis