Hb_001135_080

Information

Type -
Description -
Location Contig1135: 76439-80023
Sequence    

Annotation

kegg
ID rcu:RCOM_0744550
description cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative (EC:2.7.8.5)
nr
ID XP_012073555.1
description PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
swissprot
ID O80952
description CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=PGPS1 PE=1 SV=1
trembl
ID A0A067LCC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06647 PE=3 SV=1
Gene Ontology
ID GO:0016021
description cdp-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04034: 76419-79829 , PASA_asmbl_04036: 78173-78310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_080 0.0 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
2 Hb_001105_070 0.0987642112 - - PREDICTED: uncharacterized protein LOC105632829 [Jatropha curcas]
3 Hb_000496_060 0.0992084773 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
4 Hb_007926_060 0.0996321095 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
5 Hb_001882_070 0.1008909068 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
6 Hb_005433_040 0.1016271943 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
7 Hb_002234_070 0.1042821615 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
8 Hb_000987_070 0.1067101158 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
9 Hb_002016_100 0.1080611469 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
10 Hb_000025_120 0.1085519719 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
11 Hb_009773_020 0.1089772423 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
12 Hb_001687_040 0.1151867003 - - actin-depolymerizing factor [Hevea brasiliensis]
13 Hb_012779_100 0.1161157119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_065525_020 0.1166518232 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
15 Hb_002030_040 0.1167659775 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
16 Hb_001437_220 0.1174234676 - - Transmembrane protein, putative [Ricinus communis]
17 Hb_000123_170 0.1189164608 - - Rab3 [Hevea brasiliensis]
18 Hb_003893_090 0.1195075231 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
19 Hb_003632_010 0.1199468765 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000840_030 0.1201022062 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_080 Hb_001135_080 Hb_001105_070 Hb_001105_070 Hb_001135_080--Hb_001105_070 Hb_000496_060 Hb_000496_060 Hb_001135_080--Hb_000496_060 Hb_007926_060 Hb_007926_060 Hb_001135_080--Hb_007926_060 Hb_001882_070 Hb_001882_070 Hb_001135_080--Hb_001882_070 Hb_005433_040 Hb_005433_040 Hb_001135_080--Hb_005433_040 Hb_002234_070 Hb_002234_070 Hb_001135_080--Hb_002234_070 Hb_005431_010 Hb_005431_010 Hb_001105_070--Hb_005431_010 Hb_000025_120 Hb_000025_120 Hb_001105_070--Hb_000025_120 Hb_012053_070 Hb_012053_070 Hb_001105_070--Hb_012053_070 Hb_000987_070 Hb_000987_070 Hb_001105_070--Hb_000987_070 Hb_009773_020 Hb_009773_020 Hb_001105_070--Hb_009773_020 Hb_065525_020 Hb_065525_020 Hb_001105_070--Hb_065525_020 Hb_000496_060--Hb_000025_120 Hb_005432_030 Hb_005432_030 Hb_000496_060--Hb_005432_030 Hb_003175_040 Hb_003175_040 Hb_000496_060--Hb_003175_040 Hb_117134_010 Hb_117134_010 Hb_000496_060--Hb_117134_010 Hb_014720_080 Hb_014720_080 Hb_000496_060--Hb_014720_080 Hb_001833_110 Hb_001833_110 Hb_000496_060--Hb_001833_110 Hb_004374_140 Hb_004374_140 Hb_007926_060--Hb_004374_140 Hb_004449_200 Hb_004449_200 Hb_007926_060--Hb_004449_200 Hb_008544_010 Hb_008544_010 Hb_007926_060--Hb_008544_010 Hb_006573_220 Hb_006573_220 Hb_007926_060--Hb_006573_220 Hb_001461_010 Hb_001461_010 Hb_007926_060--Hb_001461_010 Hb_007926_060--Hb_001105_070 Hb_002631_020 Hb_002631_020 Hb_001882_070--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_001882_070--Hb_006452_040 Hb_003018_050 Hb_003018_050 Hb_001882_070--Hb_003018_050 Hb_007416_020 Hb_007416_020 Hb_001882_070--Hb_007416_020 Hb_000441_190 Hb_000441_190 Hb_001882_070--Hb_000441_190 Hb_000283_110 Hb_000283_110 Hb_001882_070--Hb_000283_110 Hb_035273_030 Hb_035273_030 Hb_005433_040--Hb_035273_030 Hb_005433_040--Hb_001105_070 Hb_005433_040--Hb_009773_020 Hb_005433_040--Hb_065525_020 Hb_002030_040 Hb_002030_040 Hb_005433_040--Hb_002030_040 Hb_000684_270 Hb_000684_270 Hb_002234_070--Hb_000684_270 Hb_077354_010 Hb_077354_010 Hb_002234_070--Hb_077354_010 Hb_134949_020 Hb_134949_020 Hb_002234_070--Hb_134949_020 Hb_144598_020 Hb_144598_020 Hb_002234_070--Hb_144598_020 Hb_003125_150 Hb_003125_150 Hb_002234_070--Hb_003125_150 Hb_002234_070--Hb_000987_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.0908 9.78171 10.6985 30.6882 11.3637 32.0731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.6205 55.825 43.9585 13.8862 11.4815

CAGE analysis