Hb_001135_160

Information

Type -
Description -
Location Contig1135: 210160-214269
Sequence    

Annotation

kegg
ID pop:POPTR_0008s04620g
description POPTRDRAFT_832517; hypothetical protein
nr
ID XP_012073600.1
description PREDICTED: elongator complex protein 6 [Jatropha curcas]
swissprot
ID Q8L9Y2
description Elongator complex protein 6 OS=Arabidopsis thaliana GN=ELP6 PE=1 SV=1
trembl
ID A0A067LNT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06650 PE=4 SV=1
Gene Ontology
ID GO:0033588
description elongator complex protein 6 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04048: 210418-212183 , PASA_asmbl_04049: 212272-214014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_160 0.0 - - PREDICTED: elongator complex protein 6 [Jatropha curcas]
2 Hb_001855_010 0.0758985066 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
3 Hb_000172_370 0.0786474721 - - -
4 Hb_000556_080 0.0799783214 - - PREDICTED: synaptotagmin-5 [Pyrus x bretschneideri]
5 Hb_000365_360 0.0815924919 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
6 Hb_000017_120 0.0816189914 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
7 Hb_000012_090 0.0818068858 - - 3'-5' exonuclease, putative [Ricinus communis]
8 Hb_028639_060 0.083633578 - - transporter, putative [Ricinus communis]
9 Hb_001214_130 0.08378546 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
10 Hb_002014_080 0.0849479701 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
11 Hb_003005_020 0.0861747078 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
12 Hb_005754_060 0.0866340274 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002609_110 0.0872758578 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
14 Hb_029510_140 0.0873596362 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
15 Hb_005063_040 0.0875508064 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
16 Hb_182026_020 0.0879917435 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_002631_050 0.08821644 - - membrane associated ring finger 1,8, putative [Ricinus communis]
18 Hb_002149_020 0.089412242 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
19 Hb_001030_120 0.0894597783 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
20 Hb_011224_080 0.0896741551 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_160 Hb_001135_160 Hb_001855_010 Hb_001855_010 Hb_001135_160--Hb_001855_010 Hb_000172_370 Hb_000172_370 Hb_001135_160--Hb_000172_370 Hb_000556_080 Hb_000556_080 Hb_001135_160--Hb_000556_080 Hb_000365_360 Hb_000365_360 Hb_001135_160--Hb_000365_360 Hb_000017_120 Hb_000017_120 Hb_001135_160--Hb_000017_120 Hb_000012_090 Hb_000012_090 Hb_001135_160--Hb_000012_090 Hb_000023_140 Hb_000023_140 Hb_001855_010--Hb_000023_140 Hb_014568_030 Hb_014568_030 Hb_001855_010--Hb_014568_030 Hb_005063_040 Hb_005063_040 Hb_001855_010--Hb_005063_040 Hb_005754_060 Hb_005754_060 Hb_001855_010--Hb_005754_060 Hb_071736_010 Hb_071736_010 Hb_001855_010--Hb_071736_010 Hb_148912_010 Hb_148912_010 Hb_000172_370--Hb_148912_010 Hb_003005_020 Hb_003005_020 Hb_000172_370--Hb_003005_020 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_182026_020 Hb_182026_020 Hb_000556_080--Hb_182026_020 Hb_001439_120 Hb_001439_120 Hb_000556_080--Hb_001439_120 Hb_011224_080 Hb_011224_080 Hb_000556_080--Hb_011224_080 Hb_010638_020 Hb_010638_020 Hb_000556_080--Hb_010638_020 Hb_012340_010 Hb_012340_010 Hb_000556_080--Hb_012340_010 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000317_430 Hb_000317_430 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_002014_080 Hb_002014_080 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_000365_360--Hb_118419_020 Hb_001006_170 Hb_001006_170 Hb_000017_120--Hb_001006_170 Hb_001030_120 Hb_001030_120 Hb_000017_120--Hb_001030_120 Hb_012340_030 Hb_012340_030 Hb_000017_120--Hb_012340_030 Hb_004223_130 Hb_004223_130 Hb_000017_120--Hb_004223_130 Hb_002631_050 Hb_002631_050 Hb_000017_120--Hb_002631_050 Hb_002272_250 Hb_002272_250 Hb_000017_120--Hb_002272_250 Hb_028639_060 Hb_028639_060 Hb_000012_090--Hb_028639_060 Hb_006922_080 Hb_006922_080 Hb_000012_090--Hb_006922_080 Hb_003728_020 Hb_003728_020 Hb_000012_090--Hb_003728_020 Hb_003453_020 Hb_003453_020 Hb_000012_090--Hb_003453_020 Hb_000012_090--Hb_002014_080 Hb_003602_040 Hb_003602_040 Hb_000012_090--Hb_003602_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.9431 3.67689 5.40915 6.35134 28.8397 31.6988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.2109 17.258 21.2499 10.4116 5.67246

CAGE analysis