Hb_001135_170

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1135: 223665-226702
Sequence    

Annotation

kegg
ID rcu:RCOM_0743800
description Two-component response regulator ARR2, putative
nr
ID XP_002525050.1
description Two-component response regulator ARR2, putative [Ricinus communis]
swissprot
ID A2YQ93
description Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2
trembl
ID B9SGD1
description Two-component response regulator ARR2, putative OS=Ricinus communis GN=RCOM_0743800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04051: 223341-225102 , PASA_asmbl_04052: 225241-225439 , PASA_asmbl_04053: 225445-226013 , PASA_asmbl_04054: 226197-226528
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_170 0.0 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
2 Hb_004631_020 0.0643458287 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
3 Hb_000992_090 0.0656222935 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
4 Hb_011344_030 0.0673517763 - - PREDICTED: elongation factor G-2, chloroplastic [Jatropha curcas]
5 Hb_001832_180 0.069460353 transcription factor TF Family: C2C2-GATA hypothetical protein RCOM_1046780 [Ricinus communis]
6 Hb_023344_040 0.0742033277 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000261_390 0.0758806924 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 15 [Jatropha curcas]
8 Hb_003053_080 0.0767300155 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000841_040 0.0788682284 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
10 Hb_000282_100 0.0800923748 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
11 Hb_003090_050 0.0814812176 - - fructose-1,6-bisphosphatase, putative [Ricinus communis]
12 Hb_001135_190 0.0840605633 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
13 Hb_000009_470 0.084802877 - - Oxygen-evolving enhancer protein 1, chloroplast precursor, putative [Ricinus communis]
14 Hb_000029_390 0.0852908041 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
15 Hb_000010_380 0.0862725041 - - hypothetical protein CICLE_v10020897mg [Citrus clementina]
16 Hb_032631_060 0.0868361741 - - Myosin heavy chain, putative [Ricinus communis]
17 Hb_000111_460 0.0875250465 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
18 Hb_001951_040 0.0885569135 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
19 Hb_001287_070 0.0910474809 - - latex plastidic aldolase-like protein [Hevea brasiliensis]
20 Hb_009093_020 0.092435125 - - PREDICTED: uncharacterized protein LOC105642100 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_170 Hb_001135_170 Hb_004631_020 Hb_004631_020 Hb_001135_170--Hb_004631_020 Hb_000992_090 Hb_000992_090 Hb_001135_170--Hb_000992_090 Hb_011344_030 Hb_011344_030 Hb_001135_170--Hb_011344_030 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_023344_040 Hb_023344_040 Hb_001135_170--Hb_023344_040 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_004712_230 Hb_004712_230 Hb_004631_020--Hb_004712_230 Hb_000841_040 Hb_000841_040 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_005736_030 Hb_005736_030 Hb_004631_020--Hb_005736_030 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_000992_090--Hb_023344_040 Hb_000992_090--Hb_011344_030 Hb_000009_470 Hb_000009_470 Hb_000992_090--Hb_000009_470 Hb_000029_390 Hb_000029_390 Hb_000992_090--Hb_000029_390 Hb_000103_240 Hb_000103_240 Hb_000992_090--Hb_000103_240 Hb_011344_030--Hb_000009_470 Hb_011344_030--Hb_023344_040 Hb_000111_460 Hb_000111_460 Hb_011344_030--Hb_000111_460 Hb_007044_020 Hb_007044_020 Hb_011344_030--Hb_007044_020 Hb_001832_180--Hb_000841_040 Hb_001832_180--Hb_003090_050 Hb_000010_380 Hb_000010_380 Hb_001832_180--Hb_000010_380 Hb_001287_070 Hb_001287_070 Hb_001832_180--Hb_001287_070 Hb_000282_100 Hb_000282_100 Hb_001832_180--Hb_000282_100 Hb_023344_040--Hb_000111_460 Hb_023344_040--Hb_000009_470 Hb_014361_120 Hb_014361_120 Hb_023344_040--Hb_014361_120 Hb_000261_390--Hb_001832_180 Hb_000261_390--Hb_011344_030 Hb_000261_390--Hb_023344_040 Hb_000261_390--Hb_004631_020 Hb_000261_390--Hb_001287_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.123811 0.704688 9.89545 2.78308 0 0.164815
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0891701 0.0701541 0.132017 0.25188 37.7851

CAGE analysis