Hb_001135_190

Information

Type transcription factor
Description TF Family: Orphans
Location Contig1135: 240136-253821
Sequence    

Annotation

kegg
ID mus:103994063
description two-component response regulator-like PRR73
nr
ID XP_007009674.1
description Pseudo response regulator isoform 11 [Theobroma cacao]
swissprot
ID Q9LVG4
description Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1
trembl
ID A0A061FUI9
description Pseudo response regulator isoform 11 OS=Theobroma cacao GN=TCM_043038 PE=4 SV=1
Gene Ontology
ID GO:0005622
description pseudo response isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04056: 246302-253700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_190 0.0 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
2 Hb_001951_040 0.0755299933 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
3 Hb_001135_170 0.0840605633 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
4 Hb_000282_100 0.0871670335 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
5 Hb_000029_390 0.0913768546 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
6 Hb_000349_150 0.0945995241 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
7 Hb_004855_030 0.0946889144 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_000992_090 0.0967188745 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
9 Hb_020805_090 0.0986006103 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
10 Hb_004542_030 0.099388952 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
11 Hb_002995_060 0.1034773592 - - PREDICTED: alkane hydroxylase MAH1-like [Jatropha curcas]
12 Hb_001083_040 0.1040517944 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
13 Hb_004920_080 0.1046489883 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
14 Hb_000832_050 0.1055704801 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
15 Hb_001289_050 0.1075293987 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
16 Hb_004631_020 0.1077784127 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
17 Hb_002027_420 0.107780579 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
18 Hb_005736_030 0.1082671864 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
19 Hb_011689_070 0.1085438866 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
20 Hb_007122_010 0.1111281842 - - hypothetical protein JCGZ_21227 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_190 Hb_001135_190 Hb_001951_040 Hb_001951_040 Hb_001135_190--Hb_001951_040 Hb_001135_170 Hb_001135_170 Hb_001135_190--Hb_001135_170 Hb_000282_100 Hb_000282_100 Hb_001135_190--Hb_000282_100 Hb_000029_390 Hb_000029_390 Hb_001135_190--Hb_000029_390 Hb_000349_150 Hb_000349_150 Hb_001135_190--Hb_000349_150 Hb_004855_030 Hb_004855_030 Hb_001135_190--Hb_004855_030 Hb_005736_030 Hb_005736_030 Hb_001951_040--Hb_005736_030 Hb_020805_090 Hb_020805_090 Hb_001951_040--Hb_020805_090 Hb_004631_020 Hb_004631_020 Hb_001951_040--Hb_004631_020 Hb_007122_010 Hb_007122_010 Hb_001951_040--Hb_007122_010 Hb_001951_040--Hb_004855_030 Hb_001135_170--Hb_004631_020 Hb_000992_090 Hb_000992_090 Hb_001135_170--Hb_000992_090 Hb_011344_030 Hb_011344_030 Hb_001135_170--Hb_011344_030 Hb_001832_180 Hb_001832_180 Hb_001135_170--Hb_001832_180 Hb_023344_040 Hb_023344_040 Hb_001135_170--Hb_023344_040 Hb_000261_390 Hb_000261_390 Hb_001135_170--Hb_000261_390 Hb_001289_050 Hb_001289_050 Hb_000282_100--Hb_001289_050 Hb_009093_020 Hb_009093_020 Hb_000282_100--Hb_009093_020 Hb_000282_100--Hb_000029_390 Hb_000841_040 Hb_000841_040 Hb_000282_100--Hb_000841_040 Hb_000282_100--Hb_004631_020 Hb_000282_100--Hb_001832_180 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000029_390--Hb_009093_020 Hb_001517_060 Hb_001517_060 Hb_000029_390--Hb_001517_060 Hb_000029_390--Hb_004631_020 Hb_000349_150--Hb_004855_030 Hb_000922_110 Hb_000922_110 Hb_000349_150--Hb_000922_110 Hb_011689_070 Hb_011689_070 Hb_000349_150--Hb_011689_070 Hb_000349_150--Hb_020805_090 Hb_004150_020 Hb_004150_020 Hb_000349_150--Hb_004150_020 Hb_000977_260 Hb_000977_260 Hb_000349_150--Hb_000977_260 Hb_004855_030--Hb_020805_090 Hb_003251_010 Hb_003251_010 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_003208_010 Hb_003208_010 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0284955 0.348864 3.80273 1.46564 0 0.127588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.186791 0.145884 22.4945

CAGE analysis