Hb_001135_210

Information

Type -
Description -
Location Contig1135: 274321-285463
Sequence    

Annotation

kegg
ID rcu:RCOM_0743060
description adenylate kinase 1 chloroplast, putative (EC:2.7.4.3)
nr
ID XP_012073625.1
description PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
swissprot
ID Q9ZUU1
description Adenylate kinase 1, chloroplastic OS=Arabidopsis thaliana GN=ADK PE=2 SV=1
trembl
ID A0A067LFU3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06654 PE=3 SV=1
Gene Ontology
ID GO:0004017
description probable adenylate kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04057: 274325-285430
cDNA
(Sanger)
(ID:Location)		 008_F13.ab1: 283905-285428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_210 0.0 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
2 Hb_001232_140 0.0738318767 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
3 Hb_000099_130 0.0829976749 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
4 Hb_002182_030 0.0900329948 - - hypothetical protein Csa_5G139175 [Cucumis sativus]
5 Hb_000784_030 0.0985984832 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
6 Hb_001157_010 0.0993863429 - - deoxyhypusine synthase, putative [Ricinus communis]
7 Hb_006472_050 0.1006294883 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 isoform X2 [Elaeis guineensis]
8 Hb_003581_260 0.1017668413 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
9 Hb_032969_030 0.1057234392 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_006569_100 0.1097218022 - - hypothetical protein POPTR_0005s26990g [Populus trichocarpa]
11 Hb_000802_100 0.1110203496 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
12 Hb_003929_120 0.1114351242 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
13 Hb_001314_040 0.1126114464 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]
14 Hb_007594_120 0.1135757308 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
15 Hb_003581_220 0.1139899269 - - unnamed protein product [Vitis vinifera]
16 Hb_020419_020 0.1153719074 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_000398_160 0.1157442225 - - GDP-mannose transporter, putative [Ricinus communis]
18 Hb_000562_040 0.1169862271 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
19 Hb_002876_120 0.1172657914 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
20 Hb_000836_130 0.1173006236 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_210 Hb_001135_210 Hb_001232_140 Hb_001232_140 Hb_001135_210--Hb_001232_140 Hb_000099_130 Hb_000099_130 Hb_001135_210--Hb_000099_130 Hb_002182_030 Hb_002182_030 Hb_001135_210--Hb_002182_030 Hb_000784_030 Hb_000784_030 Hb_001135_210--Hb_000784_030 Hb_001157_010 Hb_001157_010 Hb_001135_210--Hb_001157_010 Hb_006472_050 Hb_006472_050 Hb_001135_210--Hb_006472_050 Hb_005663_120 Hb_005663_120 Hb_001232_140--Hb_005663_120 Hb_032969_030 Hb_032969_030 Hb_001232_140--Hb_032969_030 Hb_000896_120 Hb_000896_120 Hb_001232_140--Hb_000896_120 Hb_001232_140--Hb_000099_130 Hb_001232_140--Hb_001157_010 Hb_000141_020 Hb_000141_020 Hb_000099_130--Hb_000141_020 Hb_001159_080 Hb_001159_080 Hb_000099_130--Hb_001159_080 Hb_000424_210 Hb_000424_210 Hb_000099_130--Hb_000424_210 Hb_162275_030 Hb_162275_030 Hb_000099_130--Hb_162275_030 Hb_002182_030--Hb_006472_050 Hb_000975_300 Hb_000975_300 Hb_002182_030--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_002182_030--Hb_007594_120 Hb_002876_120 Hb_002876_120 Hb_002182_030--Hb_002876_120 Hb_003581_260 Hb_003581_260 Hb_002182_030--Hb_003581_260 Hb_000562_040 Hb_000562_040 Hb_000784_030--Hb_000562_040 Hb_000836_130 Hb_000836_130 Hb_000784_030--Hb_000836_130 Hb_000784_030--Hb_001232_140 Hb_010931_050 Hb_010931_050 Hb_000784_030--Hb_010931_050 Hb_000784_030--Hb_003581_260 Hb_001314_040 Hb_001314_040 Hb_001157_010--Hb_001314_040 Hb_003326_020 Hb_003326_020 Hb_001157_010--Hb_003326_020 Hb_001157_010--Hb_002876_120 Hb_000239_030 Hb_000239_030 Hb_001157_010--Hb_000239_030 Hb_006569_100 Hb_006569_100 Hb_001157_010--Hb_006569_100 Hb_000530_070 Hb_000530_070 Hb_001157_010--Hb_000530_070 Hb_000963_180 Hb_000963_180 Hb_006472_050--Hb_000963_180 Hb_000224_120 Hb_000224_120 Hb_006472_050--Hb_000224_120 Hb_000046_290 Hb_000046_290 Hb_006472_050--Hb_000046_290 Hb_001153_060 Hb_001153_060 Hb_006472_050--Hb_001153_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.52002 3.8651 4.77672 10.5236 6.66649 9.87332
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.2086 41.0183 49.4721 5.90895 6.38903

CAGE analysis