Hb_001135_220

Information

Type -
Description -
Location Contig1135: 286783-293629
Sequence    

Annotation

kegg
ID rcu:RCOM_1071630
description FGFR1 oncogene partner, putative
nr
ID XP_002523933.1
description FGFR1 oncogene partner, putative [Ricinus communis]
swissprot
ID Q9FQ24
description Protein TONNEAU 1b OS=Arabidopsis thaliana GN=TON1B PE=1 SV=1
trembl
ID B9SD64
description FGFR1 oncogene partner, putative OS=Ricinus communis GN=RCOM_1071630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04058: 286791-288080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_220 0.0 - - FGFR1 oncogene partner, putative [Ricinus communis]
2 Hb_003375_070 0.0549158201 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
3 Hb_005098_010 0.0732668197 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
4 Hb_000342_130 0.0805093291 - - PREDICTED: uncharacterized protein LOC105638175 isoform X1 [Jatropha curcas]
5 Hb_004414_060 0.0833471111 - - hypothetical protein JCGZ_17225 [Jatropha curcas]
6 Hb_003847_130 0.0838388814 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
7 Hb_123915_040 0.0863960746 - - PREDICTED: uncharacterized protein LOC105633952 [Jatropha curcas]
8 Hb_000317_470 0.0887068148 - - PREDICTED: CCR4-NOT transcription complex subunit 11 [Jatropha curcas]
9 Hb_001632_040 0.0899467523 - - PREDICTED: transmembrane protein adipocyte-associated 1 homolog isoform X1 [Jatropha curcas]
10 Hb_000466_140 0.0902444635 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
11 Hb_002276_170 0.09100989 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
12 Hb_002893_070 0.0910249233 - - PREDICTED: zeaxanthin epoxidase, chloroplastic [Jatropha curcas]
13 Hb_002805_270 0.0919168988 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000181_130 0.0920959245 - - ATP binding protein, putative [Ricinus communis]
15 Hb_002592_060 0.09277599 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001301_100 0.0932741945 - - transporter, putative [Ricinus communis]
17 Hb_000345_240 0.0941228694 - - PREDICTED: cyclin-H1-1 [Jatropha curcas]
18 Hb_003025_110 0.094433774 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_000139_370 0.0955296875 - - ubiquitin-activating enzyme E1c, putative [Ricinus communis]
20 Hb_000441_200 0.0955934527 - - PREDICTED: small RNA 2'-O-methyltransferase-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_220 Hb_001135_220 Hb_003375_070 Hb_003375_070 Hb_001135_220--Hb_003375_070 Hb_005098_010 Hb_005098_010 Hb_001135_220--Hb_005098_010 Hb_000342_130 Hb_000342_130 Hb_001135_220--Hb_000342_130 Hb_004414_060 Hb_004414_060 Hb_001135_220--Hb_004414_060 Hb_003847_130 Hb_003847_130 Hb_001135_220--Hb_003847_130 Hb_123915_040 Hb_123915_040 Hb_001135_220--Hb_123915_040 Hb_000139_370 Hb_000139_370 Hb_003375_070--Hb_000139_370 Hb_011930_160 Hb_011930_160 Hb_003375_070--Hb_011930_160 Hb_002273_120 Hb_002273_120 Hb_003375_070--Hb_002273_120 Hb_003025_110 Hb_003025_110 Hb_003375_070--Hb_003025_110 Hb_007632_240 Hb_007632_240 Hb_003375_070--Hb_007632_240 Hb_005098_010--Hb_003375_070 Hb_000526_050 Hb_000526_050 Hb_005098_010--Hb_000526_050 Hb_001300_070 Hb_001300_070 Hb_005098_010--Hb_001300_070 Hb_005098_010--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_005098_010--Hb_002785_050 Hb_000120_790 Hb_000120_790 Hb_000342_130--Hb_000120_790 Hb_004841_010 Hb_004841_010 Hb_000342_130--Hb_004841_010 Hb_000173_290 Hb_000173_290 Hb_000342_130--Hb_000173_290 Hb_065500_060 Hb_065500_060 Hb_000342_130--Hb_065500_060 Hb_000883_020 Hb_000883_020 Hb_000342_130--Hb_000883_020 Hb_000331_260 Hb_000331_260 Hb_000342_130--Hb_000331_260 Hb_001632_040 Hb_001632_040 Hb_004414_060--Hb_001632_040 Hb_002835_040 Hb_002835_040 Hb_004414_060--Hb_002835_040 Hb_003964_070 Hb_003964_070 Hb_004414_060--Hb_003964_070 Hb_003163_020 Hb_003163_020 Hb_004414_060--Hb_003163_020 Hb_001493_030 Hb_001493_030 Hb_004414_060--Hb_001493_030 Hb_007317_110 Hb_007317_110 Hb_004414_060--Hb_007317_110 Hb_003847_130--Hb_007632_240 Hb_001442_040 Hb_001442_040 Hb_003847_130--Hb_001442_040 Hb_007645_100 Hb_007645_100 Hb_003847_130--Hb_007645_100 Hb_000466_140 Hb_000466_140 Hb_003847_130--Hb_000466_140 Hb_002592_060 Hb_002592_060 Hb_003847_130--Hb_002592_060 Hb_004410_030 Hb_004410_030 Hb_003847_130--Hb_004410_030 Hb_000417_130 Hb_000417_130 Hb_123915_040--Hb_000417_130 Hb_000317_470 Hb_000317_470 Hb_123915_040--Hb_000317_470 Hb_004254_090 Hb_004254_090 Hb_123915_040--Hb_004254_090 Hb_001357_250 Hb_001357_250 Hb_123915_040--Hb_001357_250 Hb_000905_110 Hb_000905_110 Hb_123915_040--Hb_000905_110 Hb_001021_150 Hb_001021_150 Hb_123915_040--Hb_001021_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.93924 4.8885 9.3069 8.8769 17.6474 12.8334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.5549 11.517 8.37374 10.8869 10.7669

CAGE analysis