Hb_001135_280

Information

Type -
Description -
Location Contig1135: 342614-344820
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_280 0.0 - - -
2 Hb_000513_070 0.233277709 - - PREDICTED: cysteine-rich receptor-like protein kinase 42 [Jatropha curcas]
3 Hb_010436_030 0.2349812388 - - Ribonuclease III, putative [Ricinus communis]
4 Hb_001242_090 0.2359055581 - - 40S ribosomal protein S18 [Colletotrichum fioriniae PJ7]
5 Hb_000883_030 0.2376475355 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
6 Hb_006111_070 0.2413650805 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
7 Hb_006452_090 0.2423250078 - - PREDICTED: eukaryotic translation initiation factor 5B [Jatropha curcas]
8 Hb_073452_010 0.2423698521 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_001703_120 0.2448778502 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
10 Hb_020665_010 0.2503112177 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
11 Hb_001912_080 0.250640326 - - vacuolar protein sorting-associated protein, putative [Ricinus communis]
12 Hb_022148_010 0.250661892 - - PREDICTED: uncharacterized protein LOC105638910 [Jatropha curcas]
13 Hb_000959_090 0.2506974876 - - conserved hypothetical protein [Ricinus communis]
14 Hb_146339_010 0.2511345418 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
15 Hb_003170_040 0.2522731609 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
16 Hb_145915_010 0.2525620322 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
17 Hb_066487_010 0.2526580509 - - conserved hypothetical protein [Ricinus communis]
18 Hb_024404_010 0.2560096571 - - PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
19 Hb_001439_140 0.2567471667 - - pattern formation protein, putative [Ricinus communis]
20 Hb_003001_150 0.2593518188 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001135_280 Hb_001135_280 Hb_000513_070 Hb_000513_070 Hb_001135_280--Hb_000513_070 Hb_010436_030 Hb_010436_030 Hb_001135_280--Hb_010436_030 Hb_001242_090 Hb_001242_090 Hb_001135_280--Hb_001242_090 Hb_000883_030 Hb_000883_030 Hb_001135_280--Hb_000883_030 Hb_006111_070 Hb_006111_070 Hb_001135_280--Hb_006111_070 Hb_006452_090 Hb_006452_090 Hb_001135_280--Hb_006452_090 Hb_000513_070--Hb_006452_090 Hb_001247_200 Hb_001247_200 Hb_000513_070--Hb_001247_200 Hb_048476_170 Hb_048476_170 Hb_000513_070--Hb_048476_170 Hb_002814_120 Hb_002814_120 Hb_000513_070--Hb_002814_120 Hb_000384_030 Hb_000384_030 Hb_000513_070--Hb_000384_030 Hb_006816_170 Hb_006816_170 Hb_000513_070--Hb_006816_170 Hb_008247_010 Hb_008247_010 Hb_010436_030--Hb_008247_010 Hb_010436_020 Hb_010436_020 Hb_010436_030--Hb_010436_020 Hb_003001_150 Hb_003001_150 Hb_010436_030--Hb_003001_150 Hb_000005_380 Hb_000005_380 Hb_010436_030--Hb_000005_380 Hb_004440_100 Hb_004440_100 Hb_010436_030--Hb_004440_100 Hb_123777_030 Hb_123777_030 Hb_010436_030--Hb_123777_030 Hb_003688_160 Hb_003688_160 Hb_001242_090--Hb_003688_160 Hb_073452_010 Hb_073452_010 Hb_001242_090--Hb_073452_010 Hb_003881_050 Hb_003881_050 Hb_001242_090--Hb_003881_050 Hb_000251_090 Hb_000251_090 Hb_001242_090--Hb_000251_090 Hb_052689_010 Hb_052689_010 Hb_001242_090--Hb_052689_010 Hb_003688_170 Hb_003688_170 Hb_001242_090--Hb_003688_170 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_015884_030 Hb_015884_030 Hb_006111_070--Hb_015884_030 Hb_000463_140 Hb_000463_140 Hb_006111_070--Hb_000463_140 Hb_000062_150 Hb_000062_150 Hb_006111_070--Hb_000062_150 Hb_024570_010 Hb_024570_010 Hb_006111_070--Hb_024570_010 Hb_012799_030 Hb_012799_030 Hb_006111_070--Hb_012799_030 Hb_000313_060 Hb_000313_060 Hb_006111_070--Hb_000313_060 Hb_002217_150 Hb_002217_150 Hb_006452_090--Hb_002217_150 Hb_000768_190 Hb_000768_190 Hb_006452_090--Hb_000768_190 Hb_006452_090--Hb_003001_150 Hb_126643_010 Hb_126643_010 Hb_006452_090--Hb_126643_010 Hb_002291_070 Hb_002291_070 Hb_006452_090--Hb_002291_070 Hb_064903_010 Hb_064903_010 Hb_006452_090--Hb_064903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.381843 0.102778 0.0255289 0.0329126 0.900984 0.416439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0779599 0.0612901 0.877513 0.373632 0.729668

CAGE analysis