Hb_001135_310

Information

Type -
Description -
Location Contig1135: 355461-356515
Sequence    

Annotation

kegg
ID cmo:103494548
description chlorophyll a-b binding protein 6A, chloroplastic
nr
ID XP_010099628.1
description Chlorophyll a-b binding protein 6A [Morus notabilis]
swissprot
ID P12360
description Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1
trembl
ID W9RZD3
description Chlorophyll a-b binding protein 6A OS=Morus notabilis GN=L484_013420 PE=4 SV=1
Gene Ontology
ID GO:0009522
description chlorophyll a-b binding protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04061: 355215-356529 , PASA_asmbl_04062: 355980-356525
cDNA
(Sanger)
(ID:Location)		 022_K21.ab1: 355597-356529 , 033_F04.ab1: 355462-356528 , 033_P24.ab1: 355540-356529 , 036_A21.ab1: 355480-356528 , 050_E10.ab1: 355463-356528 , 053_A15.ab1: 355507-356529

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001135_310 0.0 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
2 Hb_000719_030 0.031228419 - - Photosystem I reaction center subunit III, chloroplast precursor, putative [Ricinus communis]
3 Hb_146225_020 0.035765765 - - chlorophyll A/B binding protein, putative [Ricinus communis]
4 Hb_005280_020 0.0380413951 - - glycine cleavage system h protein, putative [Ricinus communis]
5 Hb_002743_010 0.0431238527 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002818_110 0.0549517683 transcription factor TF Family: bHLH hypothetical protein RCOM_1343120 [Ricinus communis]
7 Hb_000915_210 0.0568536452 - - conserved hypothetical protein [Ricinus communis]
8 Hb_014056_020 0.0568948833 - - zinc finger protein, putative [Ricinus communis]
9 Hb_007187_010 0.0569270685 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
10 Hb_001675_090 0.0571470656 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
11 Hb_000512_120 0.0578730515 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
12 Hb_001571_100 0.0579946965 - - chlorophyll A-B binding family protein [Populus trichocarpa]
13 Hb_000061_010 0.0599918768 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001717_060 0.0624627478 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
15 Hb_074312_010 0.062639654 - - PREDICTED: cytochrome P450 82A3-like [Jatropha curcas]
16 Hb_013726_060 0.0639598536 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 [Jatropha curcas]
17 Hb_001205_220 0.065722223 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011382_010 0.0675696684 - - hypothetical protein CICLE_v10028106mg [Citrus clementina]
19 Hb_005610_070 0.0692077639 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
20 Hb_002304_030 0.0706821425 - - hypothetical protein JCGZ_21517 [Jatropha curcas]

Gene co-expression network

sample Hb_001135_310 Hb_001135_310 Hb_000719_030 Hb_000719_030 Hb_001135_310--Hb_000719_030 Hb_146225_020 Hb_146225_020 Hb_001135_310--Hb_146225_020 Hb_005280_020 Hb_005280_020 Hb_001135_310--Hb_005280_020 Hb_002743_010 Hb_002743_010 Hb_001135_310--Hb_002743_010 Hb_002818_110 Hb_002818_110 Hb_001135_310--Hb_002818_110 Hb_000915_210 Hb_000915_210 Hb_001135_310--Hb_000915_210 Hb_000719_030--Hb_146225_020 Hb_001675_090 Hb_001675_090 Hb_000719_030--Hb_001675_090 Hb_000719_030--Hb_002818_110 Hb_013726_060 Hb_013726_060 Hb_000719_030--Hb_013726_060 Hb_001571_100 Hb_001571_100 Hb_000719_030--Hb_001571_100 Hb_146225_020--Hb_013726_060 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_146225_020--Hb_001571_100 Hb_074312_010 Hb_074312_010 Hb_005280_020--Hb_074312_010 Hb_010288_070 Hb_010288_070 Hb_005280_020--Hb_010288_070 Hb_002304_030 Hb_002304_030 Hb_005280_020--Hb_002304_030 Hb_005610_070 Hb_005610_070 Hb_005280_020--Hb_005610_070 Hb_007187_010 Hb_007187_010 Hb_005280_020--Hb_007187_010 Hb_014056_020 Hb_014056_020 Hb_002743_010--Hb_014056_020 Hb_002743_010--Hb_000915_210 Hb_002743_010--Hb_001571_100 Hb_000512_120 Hb_000512_120 Hb_002743_010--Hb_000512_120 Hb_000731_150 Hb_000731_150 Hb_002743_010--Hb_000731_150 Hb_000061_010 Hb_000061_010 Hb_002818_110--Hb_000061_010 Hb_000210_030 Hb_000210_030 Hb_002818_110--Hb_000210_030 Hb_006573_110 Hb_006573_110 Hb_002818_110--Hb_006573_110 Hb_002818_110--Hb_001675_090 Hb_008013_020 Hb_008013_020 Hb_002818_110--Hb_008013_020 Hb_000915_210--Hb_014056_020 Hb_006117_030 Hb_006117_030 Hb_000915_210--Hb_006117_030 Hb_002965_170 Hb_002965_170 Hb_000915_210--Hb_002965_170 Hb_000915_210--Hb_000731_150 Hb_000915_210--Hb_001571_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 17.649 854.607 309.808 0.0618437 0.114075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.921653 0.780399 0 0.338885 1011.84

CAGE analysis