Hb_001136_010

Information

Type -
Description -
Location Contig1136: 3195-5311
Sequence    

Annotation

kegg
ID rcu:RCOM_0353890
description hypothetical protein
nr
ID KDP29373.1
description hypothetical protein JCGZ_18294 [Jatropha curcas]
swissprot
ID Q7XYY2
description Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
trembl
ID A0A067K2V8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18294 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 25 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04066: 4113-31363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_010 0.0 - - hypothetical protein JCGZ_18294 [Jatropha curcas]
2 Hb_001054_100 0.1066793758 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
3 Hb_000329_250 0.114460963 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
4 Hb_000135_060 0.1161074537 transcription factor TF Family: MED6 PREDICTED: mediator of RNA polymerase II transcription subunit 6 [Jatropha curcas]
5 Hb_001824_010 0.1184909539 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
6 Hb_001653_020 0.1203042189 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
7 Hb_008695_050 0.1235707096 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002805_220 0.1255392169 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
9 Hb_000103_270 0.1304836578 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
10 Hb_076693_030 0.1307704843 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
11 Hb_007735_030 0.1320957299 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
12 Hb_000181_050 0.1332785547 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
13 Hb_006698_030 0.1351722907 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
14 Hb_000030_220 0.1355570828 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
15 Hb_002596_040 0.1361576113 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
16 Hb_000317_400 0.1369747471 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
17 Hb_000496_120 0.1394220422 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
18 Hb_003098_020 0.1396661474 - - 40S ribosomal protein S5B [Hevea brasiliensis]
19 Hb_011794_080 0.140098999 - - acyl-CoA thioesterase, putative [Ricinus communis]
20 Hb_002260_150 0.1402816384 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001136_010 Hb_001136_010 Hb_001054_100 Hb_001054_100 Hb_001136_010--Hb_001054_100 Hb_000329_250 Hb_000329_250 Hb_001136_010--Hb_000329_250 Hb_000135_060 Hb_000135_060 Hb_001136_010--Hb_000135_060 Hb_001824_010 Hb_001824_010 Hb_001136_010--Hb_001824_010 Hb_001653_020 Hb_001653_020 Hb_001136_010--Hb_001653_020 Hb_008695_050 Hb_008695_050 Hb_001136_010--Hb_008695_050 Hb_000122_020 Hb_000122_020 Hb_001054_100--Hb_000122_020 Hb_001054_100--Hb_001824_010 Hb_130235_010 Hb_130235_010 Hb_001054_100--Hb_130235_010 Hb_001054_100--Hb_008695_050 Hb_005307_050 Hb_005307_050 Hb_001054_100--Hb_005307_050 Hb_017491_060 Hb_017491_060 Hb_001054_100--Hb_017491_060 Hb_000496_120 Hb_000496_120 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_165669_010 Hb_165669_010 Hb_000329_250--Hb_165669_010 Hb_000317_400 Hb_000317_400 Hb_000329_250--Hb_000317_400 Hb_000329_250--Hb_001653_020 Hb_005736_060 Hb_005736_060 Hb_000135_060--Hb_005736_060 Hb_015807_040 Hb_015807_040 Hb_000135_060--Hb_015807_040 Hb_002061_040 Hb_002061_040 Hb_000135_060--Hb_002061_040 Hb_000331_450 Hb_000331_450 Hb_000135_060--Hb_000331_450 Hb_002284_240 Hb_002284_240 Hb_000135_060--Hb_002284_240 Hb_004724_340 Hb_004724_340 Hb_000135_060--Hb_004724_340 Hb_008695_040 Hb_008695_040 Hb_001824_010--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_001824_010--Hb_001421_060 Hb_076693_030 Hb_076693_030 Hb_001824_010--Hb_076693_030 Hb_002596_040 Hb_002596_040 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020 Hb_001653_020--Hb_002061_040 Hb_000414_130 Hb_000414_130 Hb_001653_020--Hb_000414_130 Hb_008173_110 Hb_008173_110 Hb_001653_020--Hb_008173_110 Hb_003787_010 Hb_003787_010 Hb_001653_020--Hb_003787_010 Hb_001215_040 Hb_001215_040 Hb_001653_020--Hb_001215_040 Hb_003918_010 Hb_003918_010 Hb_001653_020--Hb_003918_010 Hb_001057_040 Hb_001057_040 Hb_008695_050--Hb_001057_040 Hb_008695_050--Hb_001653_020 Hb_008695_050--Hb_005307_050 Hb_000207_400 Hb_000207_400 Hb_008695_050--Hb_000207_400 Hb_008695_050--Hb_000414_130 Hb_007928_030 Hb_007928_030 Hb_008695_050--Hb_007928_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.22011 9.63614 5.42566 20.1324 11.578 25.7032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.7866 33.3395 17.6103 34.8535 8.51304

CAGE analysis