Hb_001136_030

Information

Type -
Description -
Location Contig1136: 30823-32475
Sequence    

Annotation

kegg
ID mdm:103403242
description mediator of RNA polymerase II transcription subunit 25-like
nr
ID XP_012082042.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
swissprot
ID Q7XYY2
description Mediator of RNA polymerase II transcription subunit 25 OS=Arabidopsis thaliana GN=MED25 PE=1 SV=1
trembl
ID B9HJ00
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s11650g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04066: 4113-31363
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_030 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
2 Hb_001377_010 0.0504397443 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
3 Hb_001104_210 0.0637730112 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
4 Hb_002870_010 0.0881267338 - - PREDICTED: uncharacterized protein LOC105649339 [Jatropha curcas]
5 Hb_003090_180 0.1016446925 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
6 Hb_004881_060 0.1062121188 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
7 Hb_000911_050 0.1203234709 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
8 Hb_000487_240 0.1240505177 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
9 Hb_002122_040 0.124908009 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
10 Hb_000025_740 0.1271752057 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
11 Hb_000205_210 0.1277233813 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
12 Hb_001218_070 0.1283874993 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]
13 Hb_036069_020 0.1311424609 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
14 Hb_012807_140 0.1323576482 transcription factor TF Family: MYB hypothetical protein POPTR_0009s01270g [Populus trichocarpa]
15 Hb_008692_020 0.1347585673 - - -
16 Hb_001105_200 0.1360431704 - - catalytic, putative [Ricinus communis]
17 Hb_025526_010 0.1385983082 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
18 Hb_004712_020 0.1401278536 - - hypothetical protein JCGZ_00782 [Jatropha curcas]
19 Hb_000422_020 0.1402480354 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
20 Hb_008768_010 0.1405630298 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001136_030 Hb_001136_030 Hb_001377_010 Hb_001377_010 Hb_001136_030--Hb_001377_010 Hb_001104_210 Hb_001104_210 Hb_001136_030--Hb_001104_210 Hb_002870_010 Hb_002870_010 Hb_001136_030--Hb_002870_010 Hb_003090_180 Hb_003090_180 Hb_001136_030--Hb_003090_180 Hb_004881_060 Hb_004881_060 Hb_001136_030--Hb_004881_060 Hb_000911_050 Hb_000911_050 Hb_001136_030--Hb_000911_050 Hb_001377_010--Hb_002870_010 Hb_001377_010--Hb_001104_210 Hb_001377_010--Hb_000911_050 Hb_001514_070 Hb_001514_070 Hb_001377_010--Hb_001514_070 Hb_001377_010--Hb_003090_180 Hb_001104_210--Hb_003090_180 Hb_001104_210--Hb_004881_060 Hb_000025_740 Hb_000025_740 Hb_001104_210--Hb_000025_740 Hb_001104_210--Hb_002870_010 Hb_002870_010--Hb_001514_070 Hb_012807_140 Hb_012807_140 Hb_002870_010--Hb_012807_140 Hb_002870_010--Hb_003090_180 Hb_003090_180--Hb_004881_060 Hb_000487_240 Hb_000487_240 Hb_003090_180--Hb_000487_240 Hb_003090_180--Hb_000025_740 Hb_003900_050 Hb_003900_050 Hb_004881_060--Hb_003900_050 Hb_000205_210 Hb_000205_210 Hb_004881_060--Hb_000205_210 Hb_056101_010 Hb_056101_010 Hb_004881_060--Hb_056101_010 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_000797_030 Hb_000797_030 Hb_000911_050--Hb_000797_030 Hb_036069_020 Hb_036069_020 Hb_000911_050--Hb_036069_020 Hb_003097_200 Hb_003097_200 Hb_000911_050--Hb_003097_200 Hb_001545_270 Hb_001545_270 Hb_000911_050--Hb_001545_270 Hb_006637_040 Hb_006637_040 Hb_000911_050--Hb_006637_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.09918 0.384095 1.50405 0 0.0844378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.1921 1.19316

CAGE analysis