Hb_001136_040

Information

Type -
Description -
Location Contig1136: 41341-44977
Sequence    

Annotation

kegg
ID rcu:RCOM_0353870
description amino acid transporter, putative
nr
ID XP_002529150.1
description amino acid transporter, putative [Ricinus communis]
swissprot
ID Q9C6M2
description Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1
trembl
ID B9ST31
description Amino acid transporter, putative OS=Ricinus communis GN=RCOM_0353870 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04068: 41193-41403 , PASA_asmbl_04069: 41507-44970 , PASA_asmbl_04070: 41550-44965 , PASA_asmbl_04071: 43971-44302
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_040 0.0 - - amino acid transporter, putative [Ricinus communis]
2 Hb_007185_050 0.050533072 - - hypothetical protein JCGZ_22475 [Jatropha curcas]
3 Hb_001136_160 0.0608499978 - - catalytic, putative [Ricinus communis]
4 Hb_009783_010 0.0671876106 - - PREDICTED: sulfated surface glycoprotein 185-like [Populus euphratica]
5 Hb_001898_040 0.0715669794 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
6 Hb_011853_020 0.0736345029 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
7 Hb_000009_280 0.0749584844 - - Calmodulin, putative [Ricinus communis]
8 Hb_002874_200 0.0755188233 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
9 Hb_000230_410 0.079161939 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]
10 Hb_000680_060 0.0795013985 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
11 Hb_007122_020 0.0850927758 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
12 Hb_004032_290 0.085500816 - - protein binding protein, putative [Ricinus communis]
13 Hb_036520_030 0.0855547162 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
14 Hb_011618_110 0.0917936554 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
15 Hb_000866_130 0.0921275748 - - hypothetical protein JCGZ_14397 [Jatropha curcas]
16 Hb_000003_370 0.0923334993 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
17 Hb_003032_110 0.0946771321 - - -
18 Hb_012132_050 0.0955431455 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
19 Hb_096027_010 0.096116601 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_002636_120 0.0963647917 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_001136_040 Hb_001136_040 Hb_007185_050 Hb_007185_050 Hb_001136_040--Hb_007185_050 Hb_001136_160 Hb_001136_160 Hb_001136_040--Hb_001136_160 Hb_009783_010 Hb_009783_010 Hb_001136_040--Hb_009783_010 Hb_001898_040 Hb_001898_040 Hb_001136_040--Hb_001898_040 Hb_011853_020 Hb_011853_020 Hb_001136_040--Hb_011853_020 Hb_000009_280 Hb_000009_280 Hb_001136_040--Hb_000009_280 Hb_007185_050--Hb_000009_280 Hb_004032_290 Hb_004032_290 Hb_007185_050--Hb_004032_290 Hb_002874_200 Hb_002874_200 Hb_007185_050--Hb_002874_200 Hb_007185_050--Hb_009783_010 Hb_007185_050--Hb_001898_040 Hb_001136_160--Hb_001898_040 Hb_001136_160--Hb_009783_010 Hb_007122_020 Hb_007122_020 Hb_001136_160--Hb_007122_020 Hb_010962_020 Hb_010962_020 Hb_001136_160--Hb_010962_020 Hb_012132_050 Hb_012132_050 Hb_001136_160--Hb_012132_050 Hb_007904_280 Hb_007904_280 Hb_009783_010--Hb_007904_280 Hb_009783_010--Hb_001898_040 Hb_009783_010--Hb_012132_050 Hb_001898_040--Hb_010962_020 Hb_001898_040--Hb_012132_050 Hb_096027_010 Hb_096027_010 Hb_011853_020--Hb_096027_010 Hb_011618_110 Hb_011618_110 Hb_011853_020--Hb_011618_110 Hb_000003_370 Hb_000003_370 Hb_011853_020--Hb_000003_370 Hb_011853_020--Hb_001136_160 Hb_002636_120 Hb_002636_120 Hb_011853_020--Hb_002636_120 Hb_000230_410 Hb_000230_410 Hb_000009_280--Hb_000230_410 Hb_004650_120 Hb_004650_120 Hb_000009_280--Hb_004650_120 Hb_000009_280--Hb_004032_290 Hb_000009_280--Hb_002874_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0559225 12.3489 40.5489 115.975 0.0221634 0.0580886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.903452 42.5444

CAGE analysis