Hb_001136_060

Information

Type -
Description -
Location Contig1136: 54256-57970
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11660g
description POPTRDRAFT_656784; hypothetical protein
nr
ID XP_012082049.1
description PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
swissprot
ID Q31QE7
description ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942) GN=clpS PE=3 SV=1
trembl
ID A0A067JZH5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18297 PE=3 SV=1
Gene Ontology
ID GO:0005840
description ribosomal protein l12 atp-dependent clp protease adaptor protein family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04073: 54322-56860
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_060 0.0 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
2 Hb_000042_200 0.0997267439 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
3 Hb_000834_030 0.1017892117 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
4 Hb_000445_490 0.1048189256 - - -
5 Hb_000705_290 0.1052895692 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
6 Hb_033153_060 0.1054062187 - - Transcription elongation factor, putative [Ricinus communis]
7 Hb_003349_080 0.1066498398 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
8 Hb_161175_010 0.1104845726 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
9 Hb_000318_160 0.1122806233 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
10 Hb_003050_280 0.1149356259 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
11 Hb_003777_210 0.1175626046 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
12 Hb_001284_030 0.1186749741 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
13 Hb_000010_260 0.1196671456 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
14 Hb_000125_210 0.1197960355 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
15 Hb_000056_070 0.1203143244 - - -
16 Hb_002918_290 0.1209359077 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
17 Hb_002391_220 0.1226776839 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
18 Hb_003880_030 0.1253499042 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_000224_140 0.1263148346 - - ribonuclease z, chloroplast, putative [Ricinus communis]
20 Hb_005463_140 0.1268225134 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]

Gene co-expression network

sample Hb_001136_060 Hb_001136_060 Hb_000042_200 Hb_000042_200 Hb_001136_060--Hb_000042_200 Hb_000834_030 Hb_000834_030 Hb_001136_060--Hb_000834_030 Hb_000445_490 Hb_000445_490 Hb_001136_060--Hb_000445_490 Hb_000705_290 Hb_000705_290 Hb_001136_060--Hb_000705_290 Hb_033153_060 Hb_033153_060 Hb_001136_060--Hb_033153_060 Hb_003349_080 Hb_003349_080 Hb_001136_060--Hb_003349_080 Hb_000042_200--Hb_033153_060 Hb_002918_290 Hb_002918_290 Hb_000042_200--Hb_002918_290 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_005463_140 Hb_005463_140 Hb_000042_200--Hb_005463_140 Hb_001284_030 Hb_001284_030 Hb_000042_200--Hb_001284_030 Hb_004459_040 Hb_004459_040 Hb_000042_200--Hb_004459_040 Hb_012490_050 Hb_012490_050 Hb_000834_030--Hb_012490_050 Hb_000707_020 Hb_000707_020 Hb_000834_030--Hb_000707_020 Hb_000834_030--Hb_005463_140 Hb_003777_210 Hb_003777_210 Hb_000834_030--Hb_003777_210 Hb_000834_030--Hb_001284_030 Hb_000834_030--Hb_000042_200 Hb_002391_220 Hb_002391_220 Hb_000445_490--Hb_002391_220 Hb_000318_160 Hb_000318_160 Hb_000445_490--Hb_000318_160 Hb_000928_130 Hb_000928_130 Hb_000445_490--Hb_000928_130 Hb_001240_020 Hb_001240_020 Hb_000445_490--Hb_001240_020 Hb_000975_230 Hb_000975_230 Hb_000445_490--Hb_000975_230 Hb_000224_140 Hb_000224_140 Hb_000445_490--Hb_000224_140 Hb_161175_010 Hb_161175_010 Hb_000705_290--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_000272_140 Hb_000272_140 Hb_000705_290--Hb_000272_140 Hb_000705_290--Hb_000042_200 Hb_000705_290--Hb_001284_030 Hb_033153_060--Hb_004459_040 Hb_006541_010 Hb_006541_010 Hb_033153_060--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_033153_060--Hb_007576_170 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_003349_080--Hb_000318_160 Hb_003349_080--Hb_000224_140 Hb_003050_280 Hb_003050_280 Hb_003349_080--Hb_003050_280 Hb_068056_030 Hb_068056_030 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_003349_080--Hb_002918_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3449 8.95014 19.8342 42.0882 16.4694 27.7712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.83 109.269 53.5235 34.6946 61.9066

CAGE analysis