Hb_001136_070

Information

Type -
Description -
Location Contig1136: 57150-62821
Sequence    

Annotation

kegg
ID rcu:RCOM_0353750
description Transmembrane protein TPARL, putative
nr
ID XP_002529148.1
description Transmembrane protein TPARL, putative [Ricinus communis]
swissprot
ID Q9C6M1
description GDT1-like protein 4 OS=Arabidopsis thaliana GN=At1g25520 PE=2 SV=1
trembl
ID B9ST29
description Transmembrane protein TPARL, putative OS=Ricinus communis GN=RCOM_0353750 PE=4 SV=1
Gene Ontology
ID GO:0016021
description gdt1-like protein 4 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04074: 57156-62760
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001136_070 0.0 - - Transmembrane protein TPARL, putative [Ricinus communis]
2 Hb_000046_040 0.0896332828 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000058_130 0.0900485827 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
4 Hb_000579_120 0.0919411241 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
5 Hb_011618_050 0.0944603336 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
6 Hb_000649_230 0.0980948688 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
7 Hb_121937_010 0.1010916525 - - hypothetical protein B456_013G261900 [Gossypium raimondii]
8 Hb_107879_010 0.1028978268 - - phosphoglycerate mutase, putative [Ricinus communis]
9 Hb_000270_680 0.1048995451 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
10 Hb_000869_020 0.1054365613 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
11 Hb_012258_010 0.1054750544 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
12 Hb_004754_050 0.1060048863 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
13 Hb_004223_050 0.1061364277 - - hexokinase [Manihot esculenta]
14 Hb_000245_220 0.106616682 - - PREDICTED: uncharacterized protein LOC105635566 [Jatropha curcas]
15 Hb_171376_010 0.1066494569 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
16 Hb_001723_150 0.106751342 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
17 Hb_000297_160 0.1083387077 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
18 Hb_002304_150 0.1085466512 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
19 Hb_027380_060 0.108609579 - - PREDICTED: putative ALA-interacting subunit 2 [Jatropha curcas]
20 Hb_000690_160 0.1089524492 - - PREDICTED: uncharacterized protein LOC105121500 [Populus euphratica]

Gene co-expression network

sample Hb_001136_070 Hb_001136_070 Hb_000046_040 Hb_000046_040 Hb_001136_070--Hb_000046_040 Hb_000058_130 Hb_000058_130 Hb_001136_070--Hb_000058_130 Hb_000579_120 Hb_000579_120 Hb_001136_070--Hb_000579_120 Hb_011618_050 Hb_011618_050 Hb_001136_070--Hb_011618_050 Hb_000649_230 Hb_000649_230 Hb_001136_070--Hb_000649_230 Hb_121937_010 Hb_121937_010 Hb_001136_070--Hb_121937_010 Hb_000046_040--Hb_011618_050 Hb_000046_040--Hb_000649_230 Hb_010931_070 Hb_010931_070 Hb_000046_040--Hb_010931_070 Hb_000869_020 Hb_000869_020 Hb_000046_040--Hb_000869_020 Hb_000690_160 Hb_000690_160 Hb_000046_040--Hb_000690_160 Hb_000058_130--Hb_000579_120 Hb_000207_150 Hb_000207_150 Hb_000058_130--Hb_000207_150 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_000579_120--Hb_001232_190 Hb_000110_310 Hb_000110_310 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120 Hb_000579_120--Hb_000207_150 Hb_005144_090 Hb_005144_090 Hb_011618_050--Hb_005144_090 Hb_011618_050--Hb_000649_230 Hb_000751_030 Hb_000751_030 Hb_011618_050--Hb_000751_030 Hb_000049_140 Hb_000049_140 Hb_011618_050--Hb_000049_140 Hb_000245_220 Hb_000245_220 Hb_011618_050--Hb_000245_220 Hb_000392_230 Hb_000392_230 Hb_000649_230--Hb_000392_230 Hb_010315_060 Hb_010315_060 Hb_000649_230--Hb_010315_060 Hb_027428_010 Hb_027428_010 Hb_000649_230--Hb_027428_010 Hb_073973_130 Hb_073973_130 Hb_000649_230--Hb_073973_130 Hb_022132_050 Hb_022132_050 Hb_000649_230--Hb_022132_050 Hb_003213_010 Hb_003213_010 Hb_000649_230--Hb_003213_010 Hb_121937_010--Hb_000690_160 Hb_000347_540 Hb_000347_540 Hb_121937_010--Hb_000347_540 Hb_171376_010 Hb_171376_010 Hb_121937_010--Hb_171376_010 Hb_004934_030 Hb_004934_030 Hb_121937_010--Hb_004934_030 Hb_002374_570 Hb_002374_570 Hb_121937_010--Hb_002374_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.2201 23.9338 70.1357 67.0439 51.952 27.665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.9435 47.9844 38.9644 25.0302 45.3753

CAGE analysis